RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 NXPE1Q8N323 547 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 PPHLN1Q8NEY8 458 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 GPR150Q8NGU9 434 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 LRRC61Q9BV99 259 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 RAB17Q9H0T7 212 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 PHPT1Q9NRX4 125 aaPredicted RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 MOCS1Q9NZB8 636 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 VPS18Q9P253 973 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 SUFUQ9UMX1 484 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 BTBD3Q9Y2F9 522 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 UTP11Q9Y3A2 253 aaKnown RBP10.46□□□□□ -0.73
LIG1-210ENST00000596332 PRSS21Q9Y6M0 314 aa10.46□□□□□ -0.73
LIG1-210ENST00000596332 LY6G6EA0A0G2JKS1 128 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 C4orf47A7E2U8 309 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GOLGA8KD6RF30 607 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GOLGA8TH3BQL2 631 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CACNB4O00305 520 aaPredicted RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 PCDHGA12O60330 932 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 OR1I1O60431 355 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CBFA2T3O75081 653 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 SLC25A14O95258 325 aaPredicted RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 SYPP08247 313 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 RHOXF2BP0C7M4 288 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 ZNF883P0CG24 379 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 DGKAP23743 735 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 ACRV1P26436 265 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GABRB3P28472 473 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 EPHA8P29322 1005 aaPredicted RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 IL9RQ01113 521 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CACNG1Q06432 222 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 PDIA2Q13087 525 aaKnown RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 PTK2BQ14289 1009 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CRYMQ14894 314 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 HIF1AQ16665 826 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GPR33Q49SQ1 333 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 PIP4P1Q86T03 277 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GATAD2AQ86YP4 633 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 ANKMY2Q8IV38 441 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 KIAA2013Q8IYS2 634 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 PHACTR4Q8IZ21 702 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 BBOF1Q8ND07 529 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 FBXO36Q8NEA4 188 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 OR4L1Q8NH43 312 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 BAHD1Q8TBE0 780 aaPredicted RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 GPBAR1Q8TDU6 330 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 LRRC39Q96DD0 335 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 STAMBPL1Q96FJ0 436 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 RHOXF2Q9BQY4 288 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 MCMBPQ9BTE3 642 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 EDEM2Q9BV94 578 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 GTPBP2Q9BX10 602 aaKnown RBP10.45□□□□□ -0.74
LIG1-210ENST00000596332 TXLNGYQ9BZA5 131 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 TMEM168Q9H0V1 697 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 OR2AG1Q9H205 316 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CYP4F12Q9HCS2 524 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 SMYD2Q9NRG4 433 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 PRKAB1Q9Y478 270 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 RPS6KL1Q9Y6S9 549 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 U3KQA8 63 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 CFAP54Q96N23 3096 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 PIEZO1Q92508 2521 aa10.45□□□□□ -0.74
LIG1-210ENST00000596332 TRIM38O00635 465 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 YY2O15391 372 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 VEGFDO43915 354 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 MAGEC1O60732 1142 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 SDC3O75056 442 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 EML2O95834 649 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 S1PR4O95977 384 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 FAM153BP0C7A2 387 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 JUNDP17535 347 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 PGAM1P18669 254 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 THOP1P52888 689 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 LIMK1P53667 647 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 ARL4CP56559 192 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 TIAL1Q01085 375 aaKnown RBP eCLIP10.44□□□□□ -0.74
LIG1-210ENST00000596332 PPARDQ03181 441 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 C1orf61Q13536 156 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 LAMB3Q13751 1172 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 ITGA9Q13797 1035 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 FRG1Q14331 258 aaKnown RBP10.44□□□□□ -0.74
LIG1-210ENST00000596332 NAA30Q147X3 362 aaPredicted RBP10.44□□□□□ -0.74
LIG1-210ENST00000596332 SMAD1Q15797 465 aaKnown RBP10.44□□□□□ -0.74
LIG1-210ENST00000596332 TYSND1Q2T9J0 566 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 FAM153CQ494X1 144 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 STPG1Q5TH74 334 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 DOK6Q6PKX4 331 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 IL27RAQ6UWB1 636 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 RELL1Q8IUW5 271 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 HID1Q8IV36 788 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 DENND6AQ8IWF6 608 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 PDIK1LQ8N165 341 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 CLDN19Q8N6F1 224 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 ZNF669Q96BR6 464 aaPredicted RBP10.44□□□□□ -0.74
LIG1-210ENST00000596332 SGF29Q96ES7 293 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 BIRC8Q96P09 236 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 PHACTR1Q9C0D0 580 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 P2RY12Q9H244 342 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 SPATS2LQ9NUQ6 558 aaKnown RBP10.44□□□□□ -0.74
LIG1-210ENST00000596332 DNAJC28Q9NX36 388 aa10.44□□□□□ -0.74
LIG1-210ENST00000596332 ZDHHC3Q9NYG2 299 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms