RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 AMPD1P23109 780 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 PCK1P35558 622 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 CAPZBP47756 277 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 UGT8Q16880 541 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 BOLA3Q53S33 107 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 HENMT1Q5T8I9 393 aaKnown RBP13.65□□□□□ -0.22
VPS29-201ENST00000360579 PAPD7Q5XG87 772 aaKnown RBP13.65□□□□□ -0.22
VPS29-201ENST00000360579 MAMDC2Q7Z304 686 aaPredicted RBP13.65□□□□□ -0.22
VPS29-201ENST00000360579 POLNQ7Z5Q5 900 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 RBM12BQ8IXT5 1001 aaKnown RBP13.65□□□□□ -0.22
VPS29-201ENST00000360579 TEX26Q8N6G2 289 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 CCHCR1Q8TD31 782 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 CT55Q8WUE5 264 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 KLHL6Q8WZ60 621 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 ELMO2Q96JJ3 720 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 FCRL4Q96PJ5 515 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 CSPG4P5Q96PW8 444 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 TRIM55Q9BYV6 548 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 OSGEPL1Q9H4B0 414 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 POT1Q9NUX5 634 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 ETNK2Q9NVF9 386 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 PKD2L2Q9NZM6 624 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 PCDHGB7Q9Y5F8 929 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 SCINQ9Y6U3 715 aa13.65□□□□□ -0.22
VPS29-201ENST00000360579 DOPEY1Q5JWR5 2465 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 A1L4Q6 167 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 CLDN7O95471 211 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 LEPRP48357 1165 aaKnown RBP13.64□□□□□ -0.23
VPS29-201ENST00000360579 SPINT3P49223 89 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 RPS15P62841 145 aaKnown RBP13.64□□□□□ -0.23
VPS29-201ENST00000360579 NADK2Q4G0N4 442 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 ANKRD20A8PQ5CZ79 823 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 CACHD1Q5VU97 1274 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 ALG1LQ6GMV1 187 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 SYVN1Q86TM6 617 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 BPHLQ86WA6 291 aaPredicted RBP13.64□□□□□ -0.23
VPS29-201ENST00000360579 HPS6Q86YV9 775 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 SMIM14Q96QK8 99 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 TDRD1Q9BXT4 1180 aaKnown RBP13.64□□□□□ -0.23
VPS29-201ENST00000360579 MLXIPLQ9NP71 852 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 ACSS2Q9NR19 701 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 KLC4Q9NSK0 619 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 TAS2R14Q9NYV8 317 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 EPHA6Q9UF33 1036 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 AMACRQ9UHK6 382 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 RARRES3Q9UL19 164 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 G3BP2Q9UN86 482 aaKnown RBP13.64□□□□□ -0.23
VPS29-201ENST00000360579 ZNF451Q9Y4E5 1061 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 SLC30A1Q9Y6M5 507 aa13.64□□□□□ -0.23
VPS29-201ENST00000360579 TEP1Q99973 2627 aaKnown RBP13.63□□□□□ -0.23
VPS29-201ENST00000360579 CELSR2Q9HCU4 2923 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 C1orf232A0A0U1RR37 186 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 LGALS16A8MUM7 142 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 FADS2P1A8MWK0 482 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 TMCO5BA8MYB1 307 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 NELFEP18615 380 aaKnown RBP13.63□□□□□ -0.23
VPS29-201ENST00000360579 PTPN4P29074 926 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 PDE1BQ01064 536 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 INPP5JQ15735 1006 aaPredicted RBP13.63□□□□□ -0.23
VPS29-201ENST00000360579 CHRNA6Q15825 494 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 RNF31Q96EP0 1072 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 WDR24Q96S15 920 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 RAB33BQ9H082 229 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 ING2Q9H160 280 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 NUP62CLQ9H1M0 184 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 MRPL47Q9HD33 250 aaKnown RBP13.63□□□□□ -0.23
VPS29-201ENST00000360579 CASS4Q9NQ75 786 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.63□□□□□ -0.23
VPS29-201ENST00000360579 ATXN10Q9UBB4 475 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 CHKBQ9Y259 395 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 LRBAP50851 2863 aa13.63□□□□□ -0.23
VPS29-201ENST00000360579 ABCA12Q86UK0 2595 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 PDZK1P1A8MUH7 402 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 DPM1O60762 260 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 RNF224P0DH78 156 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ZNF8P17098 575 aaPredicted RBP13.62□□□□□ -0.23
VPS29-201ENST00000360579 SLC19A1P41440 591 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ZNF165P49910 485 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ACY1Q03154 408 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 UBXN1Q04323 297 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 TUBB3Q13509 450 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 INSCQ1MX18 579 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 SMTNL2Q2TAL5 461 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ZNF569Q5MCW4 686 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 PDPK2PQ6A1A2 396 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 TIGD7Q6NT04 549 aaPredicted RBP13.62□□□□□ -0.23
VPS29-201ENST00000360579 IRGCQ6NXR0 463 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 SIDT2Q8NBJ9 832 aaKnown RBP13.62□□□□□ -0.23
VPS29-201ENST00000360579 LPCAT1Q8NF37 534 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 UBXN4Q92575 508 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 HSPH1Q92598 858 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 TRIM11Q96F44 468 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 ERGIC2Q96RQ1 377 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 SYT11Q9BT88 431 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 TRIM7Q9C029 511 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 OR2AG1Q9H205 316 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 PCDH9Q9HC56 1237 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 TRIM39Q9HCM9 518 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 SLAMF7Q9NQ25 335 aa13.62□□□□□ -0.23
VPS29-201ENST00000360579 SCHIP1Q9P0W5 487 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms