RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 PCDHGA10Q9Y5H3 936 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PAPPA2Q9BXP8 1791 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 INTS1Q8N201 2190 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ZSCAN9O15535 394 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PRKYO43930 277 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 RPP40O75818 363 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 UGT1A1P22309 533 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 MYL9P24844 172 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 CNR2P34972 360 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PTGER2P43116 358 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 MASP1P48740 699 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TGM4P49221 684 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SNRPD1P62314 119 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 RHEBQ15382 184 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 KLHL22Q53GT1 634 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TTMPQ5BVD1 217 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 NT5DC1Q5TFE4 455 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 DNM1P34Q6PK57 102 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ZPBP2Q6X784 338 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TAS2R42Q7RTR8 314 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 LRP10Q7Z4F1 713 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ATPAF2Q8N5M1 289 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PIWIL2Q8TC59 973 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ATG4CQ96DT6 458 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 CMKLR1Q99788 373 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 C2orf49Q9BVC5 232 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 EPB41L4AQ9HCS5 686 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TCF7L2Q9NQB0 619 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 DNMT3LQ9UJW3 386 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HPSEQ9Y251 543 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ASTN1O14525 1302 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 A0A0G2JPF8 293 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 LOC100653049A0A140TA62 436 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 A0A1W2PPW3 197 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 MGAT4DA6NG13 374 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 B2RBV5 119 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HNRNPCL3B7ZW38 293 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ACOT7O00154 380 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 DFFAO00273 331 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PJA2O43164 708 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SLC28A2O43868 658 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ATE1O95260 518 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 OTCP00480 354 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 CALCAP01258 141 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HNRNPCL4P0DMR1 293 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TSPAN8P19075 237 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TAGLN2P37802 199 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ATP12AP54707 1039 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 GAD2Q05329 585 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SEMA3AQ14563 771 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 RRP1BQ14684 758 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HKDC1Q2TB90 917 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 FIP1L1Q6UN15 594 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 USP45Q70EL2 814 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PIGWQ7Z7B1 504 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SKA3Q8IX90 412 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 INO80EQ8NBZ0 244 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HEPHQ9BQS7 1158 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TMEM117Q9H0C3 514 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 RNPEPL1Q9HAU8 725 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SLC35C2Q9NQQ7 365 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 NOVA2Q9UNW9 492 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 STXBP5LQ9Y2K9 1186 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 GPSM3Q9Y4H4 160 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 MAU2Q9Y6X3 613 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 EFCAB7A8K855 629 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 RGS14O43566 566 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TSPAN1O60635 241 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 IGSF6O95976 241 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ALPIP09923 528 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 NPR2P20594 1047 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 CDH3P22223 829 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 YWHAQP27348 245 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 GHRHRQ02643 423 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 FOLH1Q04609 750 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PTK7Q13308 1070 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 QPRTQ15274 297 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 OCLNQ16625 522 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 VMACQ2NL98 169 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ZFP69Q49AA0 526 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 HSDL2Q6YN16 418 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ZZZ3Q8IYH5 903 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ADGRF4Q8IZF3 695 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 GPD1LQ8N335 351 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 TLR10Q9BXR5 811 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 ELOVL4Q9GZR5 314 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 REEP1Q9H902 201 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 CLK4Q9HAZ1 481 aaKnown RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 DCP1AQ9NPI6 582 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 THSD1Q9NS62 852 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 C19orf25Q9UFG5 118 aaPredicted RBP3.27□□□□□ -1.89
CSMD3-202ENST00000339701 PRKAG3Q9UGI9 489 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 SMCHD1A6NHR9 2005 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 WNK2Q9Y3S1 2297 aa3.27□□□□□ -1.89
CSMD3-202ENST00000339701 A0A087X1B8 175 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 RGSL1A5PLK6 1076 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM43BA6NCK2 446 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 TRIM64CA6NLI5 447 aa3.26□□□□□ -1.89
CSMD3-202ENST00000339701 SLC28A1O00337 649 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms