RNA–Protein interactions for RNA: ENST00000330588.4

SMG1-201, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5 BASIC

Gene SMG1, Length 1,588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-201ENST00000330588 LMX1AQ8TE12 382 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NSMCE3Q96MG7 304 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 VAT1Q99536 393 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SEMA3CQ99985 751 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 TDRD1Q9BXT4 1180 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 ADGRE3Q9BY15 652 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 FRMD8Q9BZ67 464 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 TRIM5Q9C035 493 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 B3GNT4Q9C0J1 378 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 CLPBQ9H078 707 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SEMA6CQ9H3T2 930 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 WDR26Q9H7D7 661 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NT5MQ9NPB1 228 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 TRNAU1APQ9NX07 287 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 VPS18Q9P253 973 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SLC17A4Q9Y2C5 497 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.31□□□□□ -1.4
SMG1-201ENST00000330588 RAI2Q9Y5P3 530 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 CABIN1Q9Y6J0 2220 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 PRSS38A1L453 326 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 LRRD1A4D1F6 860 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NPIPB15A6NHN6 443 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 TAF4O00268 1085 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 FFAR2O15552 330 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 ZW10O43264 779 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 GCATO75600 419 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NEBLO76041 1014 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 PRLP01236 227 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 CTSEP14091 401 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 JUNBP17275 347 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 ITIH2P19823 946 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NME2P22392 152 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 PTPN7P35236 360 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 ACTN2P35609 894 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 LSSP48449 732 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 STC1P52823 247 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 DCDC1P59894 354 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SLC10A2Q12908 348 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 TARDBPQ13148 414 aaKnown RBP eCLIP6.31□□□□□ -1.4
SMG1-201ENST00000330588 EIF3IQ13347 325 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 ACOX1Q15067 660 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 POU4F3Q15319 338 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SPA17Q15506 151 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 PPP2R5EQ16537 467 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 ATP13A4Q4VNC1 1196 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 TFDP3Q5H9I0 405 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 HP1BP3Q5SSJ5 553 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 PDPK2PQ6A1A2 396 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 C17orf82Q86X59 251 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 RCOR2Q8IZ40 523 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 GPR156Q8NFN8 814 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 IFI44Q8TCB0 444 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 KIAA1524Q8TCG1 905 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 GPBAR1Q8TDU6 330 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 RAPGEF5Q92565 580 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 FUBP1Q96AE4 644 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 TMEM159Q96B96 161 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 LIN37Q96GY3 246 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 RBM41Q96IZ5 413 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 ZNF578Q96N58 590 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 C19orf43Q9BQ61 176 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 RSRP1Q9BUV0 290 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 MAK16Q9BXY0 300 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 GSDMCQ9BYG8 508 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 RMI1Q9H9A7 625 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 SPTLC3Q9NUV7 552 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 RBM22Q9NW64 420 aaKnown RBP eCLIP6.31□□□□□ -1.4
SMG1-201ENST00000330588 ZC3H7BQ9UGR2 993 aaKnown RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 APPL1Q9UKG1 709 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 PNMA8BQ9ULN7 279 aaPredicted RBP6.31□□□□□ -1.4
SMG1-201ENST00000330588 PADI4Q9UM07 663 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 COQ6Q9Y2Z9 468 aa6.31□□□□□ -1.4
SMG1-201ENST00000330588 NCOR2Q9Y618 2525 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 SHROOM3Q8TF72 1996 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 HACD1B0YJ81 288 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 YY2O15391 372 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 SPOPO43791 374 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 NUDT21O43809 227 aaKnown RBP6.3□□□□□ -1.4
SMG1-201ENST00000330588 EPOP01588 193 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 KRT1P04264 644 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 PCCBP05166 539 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 HLA-DQB2P05538 268 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 COMTP21964 271 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 LHCGRP22888 699 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 GJC1P36383 396 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 CDKN2BP42772 138 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 MAGEA1P43355 309 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 CLCNKAP51800 687 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 ZNF75DP51815 510 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 EPHB1P54762 984 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 CDK3Q00526 305 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 GBE1Q04446 702 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 XRCC4Q13426 336 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 SQSTM1Q13501 440 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 PRKD1Q15139 912 aaPredicted RBP6.3□□□□□ -1.4
SMG1-201ENST00000330588 DEFB133Q30KQ1 61 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 TBC1D25Q3MII6 688 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 ODF2Q5BJF6 829 aa6.3□□□□□ -1.4
SMG1-201ENST00000330588 CERCAMQ5T4B2 595 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms