RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PLD2O14939 933 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 AURKAO14965 403 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GRID2O43424 1007 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 NUAK1O60285 661 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GPR89BP0CG08 455 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 RBP3P10745 1247 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 BPIP17213 487 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 HLA-DPA1P20036 260 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 CCKBRP32239 447 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 HMGCLP35914 325 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 MLLT3P42568 568 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GPR3P46089 330 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 EIF3EP60228 445 aaKnown RBP15.12■□□□□ 0.01
TRIM28-203ENST00000593582 B4GALNT1Q00973 533 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 CCDC173Q0VFZ6 552 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 NR1D2Q14995 579 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 SLC1A5Q15758 541 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 AMZ1Q400G9 498 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 MAP9Q49MG5 647 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 RAB11FIP2Q7L804 512 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 ZNF438Q7Z4V0 828 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 PHYKPLQ8IUZ5 450 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GLYATL1Q969I3 302 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 PLEKHG4BQ96PX9 1271 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 OR2AG1Q9H205 316 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GBA3Q9H227 469 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 C10orf88Q9H8K7 445 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 TRIM39Q9HCM9 518 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 HACD3Q9P035 362 aa15.12■□□□□ 0.01
TRIM28-203ENST00000593582 ATXN7L1Q9ULK2 861 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-203ENST00000593582 GOLGA6L9A6NEM1 432 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 B4GAT1O43505 415 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ZNF189O75820 626 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ANXA9O76027 345 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 TNFSF15O95150 251 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 CPNE6O95741 557 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ACP5P13686 325 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ITPKBP27987 946 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 CHRNA4P43681 627 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 OR1D5P58170 312 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 CLPPQ16740 277 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ZDHHC20Q5W0Z9 365 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 DARS2Q6PI48 645 aaKnown RBP15.11■□□□□ 0.01
TRIM28-203ENST00000593582 GLT6D1Q7Z4J2 308 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 PDZD3Q86UT5 571 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 PIM3Q86V86 326 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 FBXO39Q8N4B4 442 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 BLOC1S5Q8TDH9 187 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 PRR11Q96HE9 360 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-203ENST00000593582 BPIFA1Q9NP55 256 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ARFGAP3Q9NP61 516 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ATXN10Q9UBB4 475 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 TRIM10Q9UDY6 481 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 PCYT1BQ9Y5K3 369 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-203ENST00000593582 ZFYVE26Q68DK2 2539 aa15.11■□□□□ 0.01
TRIM28-203ENST00000593582 COL27A1Q8IZC6 1860 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PMS2P1A4D2B8 440 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PPM1DO15297 605 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 KCNN4O15554 427 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ITGA2BP08514 1039 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ZNF8P17098 575 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 FASLGP48023 281 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 GEMP55040 296 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 GSDMDP57764 484 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ZFP36L1Q07352 338 aaKnown RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PRPSAP1Q14558 356 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ANKRD20A2Q5SQ80 823 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ZNF648Q5T619 568 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PHF19Q5T6S3 580 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ANKRD20A1Q5TYW2 823 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ANKRD20A3Q5VUR7 823 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 AADACL2Q6P093 401 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 SFRP1Q8N474 314 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 SLC37A2Q8TED4 501 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 TMEM159Q96B96 161 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 NAF1Q96HR8 494 aaKnown RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PPP1R2P1Q96PQ5 205 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 VPS35Q96QK1 796 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 CMKLR1Q99788 373 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 FAM118BQ9BPY3 351 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 RDH14Q9HBH5 336 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 TBC1D29Q9UFV1 150 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PACSIN2Q9UNF0 486 aaPredicted RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 KCNK6Q9Y257 313 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 AAR2Q9Y312 384 aaKnown RBP15.1■□□□□ 0.01
TRIM28-203ENST00000593582 PKP3Q9Y446 797 aa15.1■□□□□ 0.01
TRIM28-203ENST00000593582 ADAMTS20P59510 1910 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 BPTFQ12830 3046 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 TRBV23OR9-2A0A075B6M9 112 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 A0A0U1RQJ8 604 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 CDRT15L2A8MXV6 281 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 VEGFDO43915 354 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 SNX2O60749 519 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 PPFIA2O75334 1257 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 FTCDO95954 541 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 JMJD7P0C870 316 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 SLC2A4P14672 509 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 UGT1A5P35504 534 aa15.09■□□□□ 0.01
TRIM28-203ENST00000593582 TLE3Q04726 772 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms