RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SVILO95425 2214 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 MICAL3Q7RTP6 2002 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 MAGEC1O60732 1142 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 SRCP12931 536 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 LSP1P33241 339 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 RPIAP49247 311 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 PRKAG1P54619 331 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 ZNF805Q5CZA5 627 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TRNP1Q6NT89 227 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 MFSD6LQ8IWD5 586 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TMEFF1Q8IYR6 380 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 EFCAB3Q8N7B9 438 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 CXorf38Q8TB03 319 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 HNRNPLLQ8WVV9 542 aaKnown RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 NXNL1Q96CM4 212 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 OXNAD1Q96HP4 312 aaPredicted RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 HERPUD2Q9BSE4 406 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TMBIM4Q9HC24 238 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 EIF2B4Q9UI10 523 aaKnown RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 SLC12A4Q9UP95 1085 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 NPEPPSL1A6NEC2 478 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 PEX11AO75192 247 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 IFNA16P05015 189 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 FECHP22830 423 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 SERPINB3P29508 390 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 AP5B1Q2VPB7 878 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 LRRC8EQ6NSJ5 796 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 CRTC1Q6UUV9 634 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 ADAMTSL2Q86TH1 951 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 GJD3Q8N144 294 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 SIDT2Q8NBJ9 832 aaKnown RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 MECRQ9BV79 373 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TRPC4Q9UBN4 977 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 EIF3LQ9Y262 564 aaKnown RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 CCDC22O60826 627 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 ERAL1O75616 437 aaKnown RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 NFATC2Q13469 925 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TAF1AQ15573 450 aaPredicted RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 TCTN1Q2MV58 587 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 CACHD1Q5VU97 1274 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 RRM2BQ7LG56 351 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TMPRSS11BQ86T26 416 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 TSPAN33Q86UF1 283 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 SPATA24Q86W54 205 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 ADGRG2Q8IZP9 1017 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 Q8N9G6 341 aaPredicted RBP9.18□□□□□ -0.94
VPS39-205ENST00000562258 OR56A4Q8NGH8 313 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 LMLNQ96KR4 655 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 OSBPL1AQ9BXW6 950 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 PADI4Q9UM07 663 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 BTRCQ9Y297 605 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 OR1A2Q9Y585 309 aa9.18□□□□□ -0.94
VPS39-205ENST00000562258 ANKRD12Q6UB98 2062 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 MAFKO60675 156 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 MLNP12872 115 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HNF1BP35680 557 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 CCR2P41597 374 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 NSG1P42857 185 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 KCNK10P57789 538 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 CSTF1Q05048 431 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 PDE1CQ14123 709 aaPredicted RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 KBTBD6Q86V97 674 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HEATR4Q86WZ0 1026 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SLC22A9Q8IVM8 553 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 ARFGAP1Q8N6T3 406 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 CAVIN3Q969G5 261 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SPDL1Q96EA4 605 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 PHF7Q9BWX1 381 aaPredicted RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 FOXQ1Q9C009 403 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 MAFFQ9ULX9 164 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SIT1Q9Y3P8 196 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 LAMB1P07942 1786 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 TUBGCP6Q96RT7 1819 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FAM237BA0A1B0GVD1 139 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 KANSL1LA0AUZ9 987 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 DCLK1O15075 740 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FYNP06241 537 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 IFNA8P32881 189 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HSPA7P48741 367 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 TRAF2Q12933 501 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FBXO43Q4G163 708 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 AENQ8WTP8 325 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 LZICQ8WZA0 190 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 ZNF778Q96MU6 729 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 UHRF1Q96T88 793 aaPredicted RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 NELL2Q99435 816 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 CDX2Q99626 313 aaPredicted RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 RPP25Q9BUL9 199 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 SLC2A11Q9BYW1 496 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 RXFP1Q9HBX9 757 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 EVA1BQ9NVM1 165 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 KCTD5Q9NXV2 234 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HEY2Q9UBP5 337 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 A0A0G2JN53 185 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FKBP9O95302 570 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 STATHP02808 62 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 NTRK1P04629 796 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 VIPR1P32241 457 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 PTGIRP43119 386 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms