RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TCEAL2Q9H3H9 227 aaPredicted RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 MRM3Q9HC36 420 aaKnown RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 MRPL40Q9NQ50 206 aaKnown RBP12.88□□□□□ -0.35
NEDD8-208ENST00000560427 ASIC3Q9UHC3 531 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 FKBPLQ9UIM3 349 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 MOSPD1Q9UJG1 213 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 DOLKQ9UPQ8 538 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 PCDHGA1Q9Y5H4 931 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 CFAP54Q96N23 3096 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 CABIN1Q9Y6J0 2220 aa12.88□□□□□ -0.35
NEDD8-208ENST00000560427 TRIM38O00635 465 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CHUKO15111 745 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 FFAR2O15552 330 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 BUD23O43709 281 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 LDOC1O95751 146 aaPredicted RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CDK4P11802 303 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ADCY8P40145 1251 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 GRIA1P42261 906 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 PTGIRP43119 386 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 GNPDA1P46926 289 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 RPIAP49247 311 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 DUSP3P51452 185 aaPredicted RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ACVR1Q04771 509 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ILKQ13418 452 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 GTF2H3Q13889 308 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 WHAMMP3Q1A5X7 153 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 PYCR3Q53H96 274 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 PPM1JQ5JR12 505 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CERCAMQ5T4B2 595 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 KCTD16Q68DU8 428 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF534Q76KX8 674 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 RD3Q7Z3Z2 195 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 SNX20Q7Z614 316 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ADGRG6Q86SQ4 1221 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 TRIM74Q86UV6 250 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 HOOK3Q86VS8 718 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 JAMLQ86YT9 394 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 KLHL7Q8IXQ5 586 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 SPATA4Q8NEY3 305 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 GPBAR1Q8TDU6 330 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 SGSM3Q96HU1 749 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 DNAJC1Q96KC8 554 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CNDP2Q96KP4 475 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CAMK1GQ96NX5 476 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CLPBQ9H078 707 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 ASB8Q9H765 288 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 PIH1D1Q9NWS0 290 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 CDC23Q9UJX2 597 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 APOBEC2Q9Y235 224 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 TMEM98Q9Y2Y6 226 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 TCAF1Q9Y4C2 921 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 KCTD3Q9Y597 815 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 OAS3Q9Y6K5 1087 aaKnown RBP12.87□□□□□ -0.35
NEDD8-208ENST00000560427 SLC30A1Q9Y6M5 507 aa12.87□□□□□ -0.35
NEDD8-208ENST00000560427 KLHL33A6NCF5 533 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 DNALI1O14645 258 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-208ENST00000560427 YY2O15391 372 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 GRID2O43424 1007 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 SIGLEC6O43699 453 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TMEM63AO94886 807 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TRIM16O95361 564 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 CKMT2P17540 419 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 ACP1P24666 158 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 MC4RP32245 332 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 POLD2P49005 469 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 SESN2P58004 480 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-208ENST00000560427 SIM1P81133 766 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-208ENST00000560427 CACNG1Q06432 222 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 C1orf61Q13536 156 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 PTPRCAPQ14761 206 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 DEFB133Q30KQ1 61 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TSTD2Q5T7W7 516 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 RNASEH2BQ5TBB1 312 aaKnown RBP12.86□□□□□ -0.35
NEDD8-208ENST00000560427 AFTPHQ6ULP2 937 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 MAATS1Q7Z4T9 603 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TAF8Q7Z7C8 310 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 ARL10Q8N8L6 244 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 NAT8LQ8N9F0 302 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 GDAP1Q8TB36 358 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 CDKN2AIPNLQ96HQ2 116 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 ZNF514Q96K75 400 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TTC25Q96NG3 672 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 BOCQ9BWV1 1114 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TMEM168Q9H0V1 697 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 ATXN10Q9UBB4 475 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 CRLS1Q9UJA2 301 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 TMPRSS11EQ9UL52 423 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 SPTBN4Q9H254 2564 aa12.86□□□□□ -0.35
NEDD8-208ENST00000560427 LAMA1P25391 3075 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 DMXL1Q9Y485 3027 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TRBV5-4A0A0C4DH59 114 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 TCRBV7S3A2A0A539 114 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 MAGEB16A2A368 324 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 FAM187AA6NFU0 413 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 CFAP99D6REC4 459 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 KCNJ13O60928 360 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 DKK1O94907 266 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 CDK14O94921 469 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 FUCA1P04066 466 aa12.85□□□□□ -0.35
NEDD8-208ENST00000560427 RALBP11234 206 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms