RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 IPCEF1Q8WWN9 437 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 MECRQ9BV79 373 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 GDI1P31150 447 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 USP46P62068 366 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 ZBTB2Q8N680 514 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SPATA22Q8NHS9 363 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SCAMP5Q8TAC9 235 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 RAD51AP1Q96B01 352 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 FAXDC2Q96IV6 333 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 HAPLN3Q96S86 360 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 PCDHB18PQ96TA0 734 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 KLHL31Q9H511 634 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 CHRAC1Q9NRG0 131 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 MRPL39Q9NYK5 338 aaKnown RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 FBXW11Q9UKB1 542 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 FCF1Q9Y324 198 aaKnown RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SAMHD1Q9Y3Z3 626 aaKnown RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SESN1Q9Y6P5 492 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 LOC100506127A0A0U1RQW1 187 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 ZMPSTE24O75844 475 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SLC35G6P0C7Q6 338 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 TNFRSF8P28908 595 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 CDKN2BP42772 138 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SPIBQ01892 262 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 NR1D2Q14995 579 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 RPTNQ6XPR3 784 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 C8orf59Q8N0T1 100 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 RBM18Q96H35 190 aaKnown RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 B3GALT6Q96L58 329 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 ZNF354BQ96LW1 612 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 PAIP2BQ9ULR5 123 aaKnown RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 FFAR2O15552 330 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 ARHGAP1Q07960 439 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 LDB1Q86U70 411 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 TAC4Q86UU9 113 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SH3RF2Q8TEC5 729 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 SHDQ96IW2 340 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 UNCXA6NJT0 531 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 CFIP05156 583 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 KLK6Q92876 244 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 TSSK3Q96PN8 268 aa13.39□□□□□ -0.27
TRAF3-208ENST00000560371 CCDC177Q9NQR7 707 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-208ENST00000560371 PLIN4Q96Q06 1357 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ARFGEF2Q9Y6D5 1785 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 CLDN9O95484 217 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ZNF57Q68EA5 555 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 MSANTD2Q6P1R3 559 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 PWWP2AQ96N64 755 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 KLHL25Q9H0H3 589 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 DDX18Q9NVP1 670 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 SEC14L3Q9UDX4 400 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 A0A0U1RQJ8 604 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 YJEFN3A6XGL0 299 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 C2orf80Q0P641 193 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 DLG2Q15700 870 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 HMGB4Q8WW32 186 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 GPR21Q99679 349 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 CDH19Q9H159 772 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 LRRC4CQ9HCJ2 640 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 NECTIN3Q9NQS3 549 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 POLR3HQ9Y535 204 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 XRN1Q8IZH2 1706 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 FPGTO14772 594 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 MGRN1O60291 552 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 MT-CYBP00156 380 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 COX4I1P13073 169 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 TMEM220Q6QAJ8 160 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 NMD3Q96D46 503 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 QKIQ96PU8 341 aaKnown RBP eCLIP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 TEFMQ96QE5 360 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 CDADC1Q9BWV3 514 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 LRTM1Q9HBL6 345 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 PRDM8Q9NQV8 689 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ALKBH4Q9NXW9 302 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 IKZF3Q9UKT9 509 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 PSMD13Q9UNM6 376 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 GNPDA1P46926 289 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ECT2LQ008S8 904 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 HNRNPDQ14103 355 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 RTL4Q6ZR62 310 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 TEX47Q8TBZ9 253 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 EMID1Q96A84 441 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 SLIT2O94813 1529 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 SUV39H1O43463 412 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 CST1P01037 141 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ASLP04424 464 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 CCND3P30281 292 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 UGT1A5P35504 534 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 PSME3P61289 254 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 DGCR6Q14129 220 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 LDLRAP1Q5SW96 308 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 STK32AQ8WU08 396 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 POP5Q969H6 163 aaKnown RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 GINS4Q9BRT9 223 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 ZNF624Q9P2J8 865 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-208ENST00000560371 NSG1P42857 185 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 RAB30Q15771 203 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 DEF8Q6ZN54 512 aa13.38□□□□□ -0.27
TRAF3-208ENST00000560371 PEG10Q86TG7 708 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms