RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 EPHB1P54762 984 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 CDH6P55285 790 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 UBE2IP63279 158 aaKnown RBP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 DSC2Q02487 901 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 DNASE1L3Q13609 305 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 KIR2DS5Q14953 304 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 DPYSL2Q16555 572 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 NADK2Q4G0N4 442 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 HENMT1Q5T8I9 393 aaKnown RBP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 CPZQ66K79 652 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 POLNQ7Z5Q5 900 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 RASGRP3Q8IV61 690 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 NDUFAF2Q8N183 169 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 GALNT11Q8NCW6 608 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 CT55Q8WUE5 264 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 NSMCE1Q8WV22 266 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 HSPH1Q92598 858 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 CSPG4P5Q96PW8 444 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 PLEKHG4BQ96PX9 1271 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 RUFY1Q96T51 708 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 NUP62CLQ9H1M0 184 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 OSGEPL1Q9H4B0 414 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 ZNF768Q9H5H4 540 aaKnown RBP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 FANCLQ9NW38 375 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 SCHIP1Q9P0W5 487 aaPredicted RBP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 LNPEPQ9UIQ6 1025 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 CHKBQ9Y259 395 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 PCDHGA6Q9Y5G7 932 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 SLC30A1Q9Y6M5 507 aa8.97□□□□□ -0.97
SYNE2-209ENST00000553308 SPTAN1Q13813 2472 aaKnown RBP8.97□□□□□ -0.97
SYNE2-209ENST00000553308 GRID2O43424 1007 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 KIF1CO43896 1103 aaKnown RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 NUAK1O60285 661 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 SPAG6O75602 509 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 RASSF9O75901 435 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 UBXN7O94888 489 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 TIAF1O95411 115 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 PRLP01236 227 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 FERP16591 822 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 CASP14P31944 242 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 GARSP41250 739 aaKnown RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 RPS18P62269 152 aaKnown RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 UBXN1Q04323 297 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ITKQ08881 620 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 CHAF1BQ13112 559 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 SEMA5AQ13591 1074 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 IL11RAQ14626 422 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 PLA2G4EQ3MJ16 856 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 PRR30Q53SZ7 412 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 CT47A1Q5JQC4 288 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF648Q5T619 568 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 TXNRD3NBQ6F5E7 133 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 CRTC3Q6UUV7 619 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 TMEM26Q6ZUK4 368 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 IRF2BP2Q7Z5L9 587 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 PHYKPLQ8IUZ5 450 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 APLFQ8IW19 511 aaPredicted RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 TEX26Q8N6G2 289 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 AVL9Q8NBF6 648 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 LPCAT1Q8NF37 534 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 RSC1A1Q92681 617 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 TDRD1Q9BXT4 1180 aaKnown RBP8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ACTL8Q9H568 366 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 RMI1Q9H9A7 625 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ARFGAP3Q9NP61 516 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 KLC4Q9NSK0 619 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ATXN10Q9UBB4 475 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 KCND3Q9UK17 655 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 ADGRG1Q9Y653 693 aa8.96□□□□□ -0.98
SYNE2-209ENST00000553308 UTP20O75691 2785 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SPTBN1Q01082 2364 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SPENQ96T58 3664 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 C1orf232A0A0U1RR37 186 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 GOLGA6L3A6NEY3 463 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 OR5K4A6NMS3 321 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 MFSD11O43934 449 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SORBS2O94875 1100 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 RARAP10276 462 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 FGF5P12034 268 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ATP1A3P13637 1013 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF8P17098 575 aaPredicted RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 AMD1P17707 334 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 XRCC1P18887 633 aaPredicted RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 COL8A1P27658 744 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SERPINB6P35237 376 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SLC19A1P41440 591 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 CAPZBP47756 277 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SPINT3P49223 89 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 SEPT7Q16181 437 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF787Q6DD87 383 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ALG1LQ6GMV1 187 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 FAM92BQ6ZTR7 304 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 PRSS42Q7Z5A4 293 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 TRIM48Q8IWZ4 208 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 AOPEPQ8N6M6 819 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ZNF653Q96CK0 615 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 ERGIC2Q96RQ1 377 aa8.95□□□□□ -0.98
SYNE2-209ENST00000553308 POLR1EQ9GZS1 481 aaKnown RBP8.95□□□□□ -0.98
SYNE2-209ENST00000553308 BRD8Q9H0E9 1235 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms