RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 BPIP17213 487 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 STIP1P31948 543 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SPAM1P38567 509 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 POLD2P49005 469 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 CLCNKAP51800 687 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 KLF1Q13351 362 aaPredicted RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 ITGA9Q13797 1035 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 NR1D2Q14995 579 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 TCEA2Q15560 299 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SLC30A9Q6PML9 568 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 ARHGEF18Q6ZSZ5 1173 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 ZNF438Q7Z4V0 828 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 C17orf82Q86X59 251 aaPredicted RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 NRROSQ86YC3 692 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 MARCH9Q86YJ5 346 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 LRRC8AQ8IWT6 810 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SLC25A41Q8N5S1 370 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 GPR26Q8NDV2 337 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 CCL4L1Q8NHW4 92 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 WDR36Q8NI36 951 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 TMEM159Q96B96 161 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 EID2BQ96D98 161 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 OXNAD1Q96HP4 312 aaPredicted RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 ZNF578Q96N58 590 aaPredicted RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 DPYSL5Q9BPU6 564 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 HERPUD2Q9BSE4 406 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 LRRN3Q9H3W5 708 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SUDS3Q9H7L9 328 aaPredicted RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 SPATS2LQ9NUQ6 558 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 CAPN6Q9Y6Q1 641 aa11.7□□□□□ -0.54
HDAC4-216ENST00000544989 URB1O60287 2271 aaKnown RBP11.7□□□□□ -0.54
HDAC4-216ENST00000544989 CCDC187A0A096LP49 1063 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 FADS2P1A8MWK0 482 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 D6RAR5 112 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 KMOO15229 486 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RRP8O43159 456 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 GRID2O43424 1007 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 KCNJ13O60928 360 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 CRTAMO95727 393 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 ATP1A1P05023 1023 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RPLP0P05388 317 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 VCLP18206 1134 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RBMS1P29558 406 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 CLDN6P56747 220 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 ERVPABLB-1P60509 514 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 GABREP78334 506 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 GTF2H3Q13889 308 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RPS6KA1Q15418 735 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 TAF1AQ15573 450 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 PARP6Q2NL67 630 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 LDLRAP1Q5SW96 308 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 ALS2CLQ60I27 953 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RANBP10Q6VN20 620 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 MARK2Q7KZI7 788 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 SPRED1Q7Z699 444 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 TRIM74Q86UV6 250 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 ARL14Q8N4G2 192 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 TRIM58Q8NG06 486 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 SNIP1Q8TAD8 396 aaKnown RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 BLOC1S5Q8TDH9 187 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 MAIP1Q8WWC4 291 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 FGF11Q92914 225 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 SH3KBP1Q96B97 665 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 LIN37Q96GY3 246 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 TTC25Q96NG3 672 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 FICDQ9BVA6 458 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 OR2AG1Q9H205 316 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 SYNDIG1Q9H7V2 258 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 THSD1Q9NS62 852 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 AKAP7Q9P0M2 348 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 IL17CQ9P0M4 197 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 PACSIN2Q9UNF0 486 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 PCDHGA8Q9Y5G5 932 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 RNF215Q9Y6U7 377 aa11.69□□□□□ -0.54
HDAC4-216ENST00000544989 ARHGEF17Q96PE2 2063 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-216ENST00000544989 MYLKQ15746 1914 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 KIR2DS5A0A0G2JLQ3 304 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 A0A0G2JNG1 304 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 KLHL33A6NCF5 533 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 ERI2A8K979 691 aaKnown RBP11.68□□□□□ -0.54
HDAC4-216ENST00000544989 KIR2DS3K7RE56 304 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 CHUKO15111 745 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 STX7O15400 261 aaKnown RBP11.68□□□□□ -0.54
HDAC4-216ENST00000544989 BRINP1O60477 761 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 ECEL1O95672 775 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 LPOP22079 712 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-216ENST00000544989 AK4P27144 223 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-216ENST00000544989 PSMB4P28070 264 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 CCKBRP32239 447 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 ADRA1AP35348 466 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 FASLGP48023 281 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 INHBCP55103 352 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 CCL7P80098 99 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 GPLD1P80108 840 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 KIR2DS5Q14953 304 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 TBC1D25Q3MII6 688 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 LRRC69Q6ZNQ3 347 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 NYAP1Q6ZVC0 841 aa11.68□□□□□ -0.54
HDAC4-216ENST00000544989 CHST15Q7LFX5 561 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-216ENST00000544989 SLC9B2Q86UD5 537 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms