RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 PPP1R2P3Q6NXS1 205 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 NDUFAF2Q8N183 169 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 NSMCE1Q8WV22 266 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 HSPH1Q92598 858 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 PLEKHG4BQ96PX9 1271 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 RMI1Q9H9A7 625 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 SCHIP1Q9P0W5 487 aaPredicted RBP17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 CHKBQ9Y259 395 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 ADGRG1Q9Y653 693 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 SLC30A1Q9Y6M5 507 aa17.6■□□□□ 0.41
CLSTN3-214ENST00000542663 GOLGA6L3A6NEY3 463 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 KIAA0754O94854 1291 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 CCDC172P0C7W6 258 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 SLC2A4P14672 509 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 GNLYP22749 145 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 PCK1P35558 622 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 PMS2P54278 862 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 DSC2Q02487 901 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 RAVER1Q8IY67 606 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 OR6C1Q96RD1 312 aa17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 TDRD1Q9BXT4 1180 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 POLR1EQ9GZS1 481 aaKnown RBP17.59■□□□□ 0.41
CLSTN3-214ENST00000542663 NOTCH2Q04721 2471 aa17.58■□□□□ 0.41
CLSTN3-214ENST00000542663 HIVEP3Q5T1R4 2406 aa17.58■□□□□ 0.41
CLSTN3-214ENST00000542663 CDC14CA4D256 554 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 LRRC10BA6NIK2 292 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 OR5K4A6NMS3 321 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 NUAK1O60285 661 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 KATNA1O75449 491 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 DNAJB5O75953 348 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 NDUFA10O95299 355 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 FTLP02792 175 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 RARAP10276 462 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 XRCC1P18887 633 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 SERPINB6P35237 376 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 NOP2P46087 812 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 LEPRP48357 1165 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 SPINT3P49223 89 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 SEPHS1P49903 392 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 CLCNKAP51800 687 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 EPHB1P54762 984 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 ITKQ08881 620 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 CRYBG3Q68DQ2 2970 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 STAMBPL1Q96FJ0 436 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 TGM7Q96PF1 710 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 LYSMD1Q96S90 227 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 TRIM55Q9BYV6 548 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 CARD9Q9H257 536 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 HSD3B7Q9H2F3 369 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF768Q9H5H4 540 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 UCK1Q9HA47 277 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 PCDH18Q9HCL0 1135 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 ATXN10Q9UBB4 475 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 PCDHGA6Q9Y5G7 932 aa17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 PRRC2CQ9Y520 2896 aaKnown RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 RP1L1Q8IWN7 2480 aaPredicted RBP17.58■□□□□ 0.4
CLSTN3-214ENST00000542663 TOX3O15405 576 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 GRID2O43424 1007 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 CREG1O75629 220 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 UBXN7O94888 489 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 AGFG2O95081 481 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 RNF224P0DH78 156 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 TYRP1P17643 537 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 IL11RAQ14626 422 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 BOLA3Q53S33 107 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 TMEM26Q6ZUK4 368 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF571Q7Z3V5 609 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 PHYKPLQ8IUZ5 450 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 APLFQ8IW19 511 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 AOPEPQ8N6M6 819 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 GALNT11Q8NCW6 608 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ARRDC2Q8TBH0 407 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF653Q96CK0 615 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ELMO2Q96JJ3 720 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 TWSG1Q9GZX9 223 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ARFGAP3Q9NP61 516 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF624Q9P2J8 865 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 KCND3Q9UK17 655 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 DNPEPQ9ULA0 475 aa17.57■□□□□ 0.4
CLSTN3-214ENST00000542663 C1orf232A0A0U1RR37 186 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 KIF1CO43896 1103 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 MFSD11O43934 449 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 VPS4BO75351 444 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 SPAG6O75602 509 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 FGF5P12034 268 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 GZMAP12544 262 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF8P17098 575 aaPredicted RBP17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 IL4RP24394 825 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 SLC19A1P41440 591 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 SEMA5AQ13591 1074 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 ZNF648Q5T619 568 aaPredicted RBP17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 E4F1Q66K89 784 aaPredicted RBP17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 RASGRP3Q8IV61 690 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 AVL9Q8NBF6 648 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 LPCAT1Q8NF37 534 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 MAML1Q92585 1016 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 FAM83DQ9H4H8 585 aa17.56■□□□□ 0.4
CLSTN3-214ENST00000542663 HAUS4Q9H6D7 363 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms