RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CT47A1Q5JQC4 288 aaPredicted RBP13.8□□□□□ -0.2
VARS-227ENST00000489979 TMCO3Q6UWJ1 677 aa13.8□□□□□ -0.2
VARS-227ENST00000489979 RASGRP3Q8IV61 690 aa13.8□□□□□ -0.2
VARS-227ENST00000489979 TGM7Q96PF1 710 aa13.8□□□□□ -0.2
VARS-227ENST00000489979 OR6C1Q96RD1 312 aa13.8□□□□□ -0.2
VARS-227ENST00000489979 OGFRQ9NZT2 677 aa13.8□□□□□ -0.2
VARS-227ENST00000489979 SEMA7AO75326 666 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 CREG1O75629 220 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 CLDN7O95471 211 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 RNF224P0DH78 156 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 ARL4AP40617 200 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 CDH6P55285 790 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 UBE2IP63279 158 aaKnown RBP13.79□□□□□ -0.2
VARS-227ENST00000489979 DNASE1L3Q13609 305 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 SMTNL2Q2TAL5 461 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 POLNQ7Z5Q5 900 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 PLEKHG4BQ96PX9 1271 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 WDR24Q96S15 920 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 TRIM55Q9BYV6 548 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 RMI1Q9H9A7 625 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 LNPEPQ9UIQ6 1025 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 PCDHGA6Q9Y5G7 932 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 SLC30A1Q9Y6M5 507 aa13.79□□□□□ -0.2
VARS-227ENST00000489979 MED13Q9UHV7 2174 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 A1L4Q6 167 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 FADS2P1A8MWK0 482 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 GRID2O43424 1007 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 SPAG6O75602 509 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 UBXN7O94888 489 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 CCNYL3P0C7X3 344 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 FERP16591 822 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 AMD1P17707 334 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 IL1R2P27930 398 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 CASP14P31944 242 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 LEPRP48357 1165 aaKnown RBP13.78□□□□□ -0.2
VARS-227ENST00000489979 SEMA5AQ13591 1074 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 IHHQ14623 411 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 IL11RAQ14626 422 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 DPYSL2Q16555 572 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 PPP1R2P3Q6NXS1 205 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 TMEM26Q6ZUK4 368 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 PHYKPLQ8IUZ5 450 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 APLFQ8IW19 511 aaPredicted RBP13.78□□□□□ -0.2
VARS-227ENST00000489979 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.78□□□□□ -0.2
VARS-227ENST00000489979 TEX26Q8N6G2 289 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 AVL9Q8NBF6 648 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 CT55Q8WUE5 264 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 HSPH1Q92598 858 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 CSPG4P5Q96PW8 444 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 NUP62CLQ9H1M0 184 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 ZNF768Q9H5H4 540 aaKnown RBP13.78□□□□□ -0.2
VARS-227ENST00000489979 UCK1Q9HA47 277 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 SCHIP1Q9P0W5 487 aaPredicted RBP13.78□□□□□ -0.2
VARS-227ENST00000489979 RCOR3Q9P2K3 495 aaPredicted RBP13.78□□□□□ -0.2
VARS-227ENST00000489979 PADI1Q9ULC6 663 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 CHKBQ9Y259 395 aa13.78□□□□□ -0.2
VARS-227ENST00000489979 GOLGA6L3A6NEY3 463 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 ENO4A6NNW6 628 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 LGALS16A8MUM7 142 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 TOX3O15405 576 aaPredicted RBP13.77□□□□□ -0.21
VARS-227ENST00000489979 NUAK1O60285 661 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 RASSF9O75901 435 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 RECKO95980 971 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 VIPP01282 170 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 CCDC172P0C7W6 258 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 FGF5P12034 268 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 ATP1A3P13637 1013 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 TCF4P15884 667 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 GARSP41250 739 aaKnown RBP13.77□□□□□ -0.21
VARS-227ENST00000489979 SPINT3P49223 89 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 CENPEQ02224 2701 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 DSC2Q02487 901 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 UBXN1Q04323 297 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 NADK2Q4G0N4 442 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 HIVEP3Q5T1R4 2406 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 HENMT1Q5T8I9 393 aaKnown RBP13.77□□□□□ -0.21
VARS-227ENST00000489979 IRF2BP2Q7Z5L9 587 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 RAVER1Q8IY67 606 aaKnown RBP13.77□□□□□ -0.21
VARS-227ENST00000489979 SYT11Q9BT88 431 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 POLR1EQ9GZS1 481 aaKnown RBP13.77□□□□□ -0.21
VARS-227ENST00000489979 CARD9Q9H257 536 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 OSGEPL1Q9H4B0 414 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 ARFGAP3Q9NP61 516 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 LHX9Q9NQ69 397 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 KLC4Q9NSK0 619 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.77□□□□□ -0.21
VARS-227ENST00000489979 FANCLQ9NW38 375 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 ATXN10Q9UBB4 475 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 DNPEPQ9ULA0 475 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 MAP4K5Q9Y4K4 846 aa13.77□□□□□ -0.21
VARS-227ENST00000489979 KIF1CO43896 1103 aaKnown RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 PRLP01236 227 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 ZNF8P17098 575 aaPredicted RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 XRCC1P18887 633 aaPredicted RBP13.76□□□□□ -0.21
VARS-227ENST00000489979 SERPINB6P35237 376 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 PCK1P35558 622 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 SLC19A1P41440 591 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 CLCNKAP51800 687 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 PGDP52209 483 aa13.76□□□□□ -0.21
VARS-227ENST00000489979 ZNF648Q5T619 568 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms