RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 ZBED2Q9BTP6 218 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 AKTIPQ9H8T0 292 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MID1IP1Q9NPA3 183 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 EPS15L1Q9UBC2 864 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 NDUFAF1Q9Y375 327 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 HELZP42694 1942 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 STX7O15400 261 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 DENRO43583 198 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 ALDOCP09972 364 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 MS4A2Q01362 244 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 GRM2Q14416 872 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PFKFB4Q16877 469 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 SFT2D3Q587I9 215 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 CLEC6AQ6EIG7 209 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PSAPL1Q6NUJ1 521 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 RPS27LQ71UM5 84 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 GOLM1Q8NBJ4 401 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 VWCEQ96DN2 955 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 C3orf30Q96M34 536 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 GPR21Q99679 349 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 HOPXQ9BPY8 73 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 GPATCH1Q9BRR8 931 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 PFDN4Q9NQP4 134 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 SDR39U1Q9NRG7 319 aaPredicted RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 ABCD2Q9UBJ2 740 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 FKBPLQ9UIM3 349 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 TRMT6Q9UJA5 497 aaKnown RBP12.13□□□□□ -0.47
PTPRF-212ENST00000477970 ZNF711Q9Y462 761 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 INSL5Q9Y5Q6 135 aa12.13□□□□□ -0.47
PTPRF-212ENST00000477970 UBA6A0AVT1 1052 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 DPPA5A6NC42 116 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 TBL1XO60907 577 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 LINGO3P0C6S8 592 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 MBL2P11226 248 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 GFAPP14136 432 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PEX2P28328 305 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 EEF1DP29692 281 aaKnown RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 TWF1Q12792 350 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 TAF12Q16514 161 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PTPRNQ16849 979 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 XKR7Q5GH72 579 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 SAMD4BQ5PRF9 694 aaKnown RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 RARS2Q5T160 578 aaKnown RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 LYPLAL1Q5VWZ2 237 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 RNF165Q6ZSG1 346 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PCYOX1LQ8NBM8 494 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 IL21Q9HBE4 155 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 NUDT4Q9NZJ9 180 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PCTPQ9UKL6 214 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PCDHGC4Q9Y5F7 938 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 ST14Q9Y5Y6 855 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 ABHD14A-ACY1A0A1B0GW23 586 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 H0Y626 953 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 SOCS5O75159 536 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PGLSO95336 258 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PRSS56P0CW18 603 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 IDO1P14902 403 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 LBPP18428 481 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PTPN5P54829 565 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 IL2P60568 153 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 FUNDC1Q8IVP5 155 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 PIANPQ8IYJ0 282 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 EFCAB3Q8N7B9 438 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 BHLHE22Q8NFJ8 381 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 HERVK_113Q902F9 699 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 ACDQ96AP0 544 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 EXOC2Q96KP1 924 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 UHRF1Q96T88 793 aaPredicted RBP12.12□□□□□ -0.47
PTPRF-212ENST00000477970 CROTQ9UKG9 612 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 IKZF3Q9UKT9 509 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 RAB26Q9ULW5 256 aa12.12□□□□□ -0.47
PTPRF-212ENST00000477970 SUPT3HB4E1H0 165 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MRASO14807 208 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 PIP5K1BO14986 540 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 HTRA2O43464 458 aaPredicted RBP12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TSPAN3O60637 253 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 SUPT3HO75486 399 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 ESRRBO95718 433 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 LYNP07948 512 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 UROSP10746 265 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 HSPA13P48723 471 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CLCN7P51798 805 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CCL23P55773 120 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TRIP10Q15642 601 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 CRY1Q16526 586 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MMEL1Q495T6 779 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 C16orf59Q7L2K0 433 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MIER2Q8N344 545 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 MINDY1Q8N5J2 469 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 PIH1D2Q8WWB5 315 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TMEM169Q96HH4 297 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TRAPPC9Q96Q05 1148 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TUBB1Q9H4B7 451 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 EBF3Q9H4W6 596 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 VPS51Q9UID3 782 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 PKP3Q9Y446 797 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 TCRBV3S1A0A5B6 114 aa12.11□□□□□ -0.47
PTPRF-212ENST00000477970 GRXCR2A6NFK2 248 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms