RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TBC1D3KA0A087X1G2 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SLC5A10A0PJK1 596 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3FA6NER0 549 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3LB9A6J9 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 GOT2P00505 430 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 POLBP06746 335 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3HP0C7X1 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 GCAP28676 217 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 EPHA8P29322 1005 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SLC26A3P40879 764 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SRSF5Q13243 272 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TRADDQ15628 312 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CHRNA6Q15825 494 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 DBN1Q16643 649 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ALG11Q2TAA5 492 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PROX2Q3B8N5 592 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 FAXCQ5TGI0 409 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3GQ6DHY5 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CAPRIN2Q6IMN6 1127 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3CQ6IPX1 549 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TBC1D3Q8IZP1 549 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PDIK1LQ8N165 341 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR13H1Q8NG92 308 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR56A4Q8NGH8 313 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR13C4Q8NGS5 318 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 OR2L2Q8NH16 312 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CALML6Q8TD86 181 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF778Q96MU6 729 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RAB33BQ9H082 229 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 CHRAC1Q9NRG0 131 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ASIC3Q9UHC3 531 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RABGEF1Q9UJ41 708 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 NOVA2Q9UNW9 492 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SNX24Q9Y343 169 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 KCTD3Q9Y597 815 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 DOCK9Q9BZ29 2069 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PRSS38A1L453 326 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 POM121BA6NF01 834 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 H3BMM5 538 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SLCO2B1O94956 709 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 IFNB1P01574 187 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 GNSP15586 552 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PAMP19021 973 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 TTPAP49638 278 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 FAM193AP78312 1265 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PLOD1Q02809 727 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PCSK7Q16549 785 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 KHDC1Q4VXA5 237 aaKnown RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RYBPQ8N488 228 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF398Q8TD17 642 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RLN3Q8WXF3 142 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 AP2M1Q96CW1 435 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RMDN1Q96DB5 314 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 LGR4Q9BXB1 951 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 ACSS3Q9H6R3 686 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 LRRC4CQ9HCJ2 640 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 RRAGDQ9NQL2 400 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 PHPT1Q9NRX4 125 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-202ENST00000394943 MKS1Q9NXB0 559 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 NLGN3Q9NZ94 848 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SLC2A6Q9UGQ3 507 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 FKBPLQ9UIM3 349 aa6.94□□□□□ -1.3
LIMA1-202ENST00000394943 SPAG17Q6Q759 2223 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 NEBLO76041 1014 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CER1O95813 267 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PRKCGP05129 697 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 SYPP08247 313 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CBSLP0DN79 551 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 GABRB3P28472 473 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CBSP35520 551 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 NSG1P42857 185 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 SGCGQ13326 291 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 INPP5AQ14642 412 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CTSL3PQ5NE16 218 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 EMBQ6PCB8 327 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 Q6ZSR6 202 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 SH2D5Q6ZV89 423 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PIANPQ8IYJ0 282 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 GPR156Q8NFN8 814 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 HMGCLL1Q8TB92 370 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 SKA1Q96BD8 255 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CERS2Q96G23 380 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CHRNA10Q9GZZ6 450 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 DPEP2Q9H4A9 486 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 WDR26Q9H7D7 661 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 NCKIPSDQ9NZQ3 722 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 KLF15Q9UIH9 416 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ST14Q9Y5Y6 855 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 NFS1Q9Y697 457 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 STX7O15400 261 aaKnown RBP6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PIAS2O75928 621 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ACADLP28330 430 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PLA2G5P39877 138 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ELK3P41970 407 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 MAPK9P45984 424 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CARSP49589 748 aaKnown RBP6.93□□□□□ -1.3
LIMA1-202ENST00000394943 EPHB1P54762 984 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 UBE2IP63279 158 aaKnown RBP6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms