RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MARCH2Q9P0N8 246 aa12.57□□□□□ -0.4
LIG1-201ENST00000263274 EIF2B4Q9UI10 523 aaKnown RBP12.57□□□□□ -0.4
LIG1-201ENST00000263274 IQCF5A8MTL0 148 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 NIPSNAP2O75323 286 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CYBBP04839 570 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 DGKQP52824 942 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 NAA20P61599 178 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 NR6A1Q15406 480 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 IMPG1Q17R60 797 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 UGT3A1Q6NUS8 523 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ABRAXAS1Q6UWZ7 409 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FRA10AC1Q70Z53 315 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 EPHX4Q8IUS5 362 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ATP6V0D2Q8N8Y2 350 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 METTL6Q8TCB7 284 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 GIPC2Q8TF65 315 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 TOP1MTQ969P6 601 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 NCLNQ969V3 563 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 MS4A4AQ96JQ5 239 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FAM193BQ96PV7 902 aaPredicted RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 C17orf80Q9BSJ5 609 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CHID1Q9BWS9 393 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ANKRD60Q9BZ19 345 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 VPS45Q9NRW7 570 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CNOT11Q9UKZ1 510 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 GIT1Q9Y2X7 761 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 PCDHGC4Q9Y5F7 938 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 C1orf232A0A0U1RR37 186 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 PTGES3LE9PB15 166 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 J3QRK9 145 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 LDB2O43679 373 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CACNG3O60359 315 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ECI2O75521 394 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 SLC22A3O75751 556 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CHRNA1P02708 482 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ELK4P28324 431 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 RPS9P46781 194 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 BFSP2Q13515 415 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 TAF1CQ15572 869 aaPredicted RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 ATP6AP1LQ52LC2 224 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 GLYATQ6IB77 296 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 IL27RAQ6UWB1 636 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 GLT6D1Q7Z4J2 308 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 LGI2Q8N0V4 545 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 PGBD5Q8N414 524 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 TRPV3Q8NET8 790 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FBXL8Q96CD0 374 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ABHD8Q96I13 439 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 DGCR6LQ9BY27 220 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ZFYVE28Q9HCC9 887 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 BPTFQ12830 3046 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 A0A0D9SEW6 157 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FFAR3O14843 346 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 GPR42O15529 346 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 GPR39O43194 453 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 MGEA5O60502 916 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 E2F6O75461 281 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CELF2O95319 508 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 ZNF24P17028 368 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 ZNF33AQ06730 810 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 LCP2Q13094 533 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FGD3Q5JSP0 725 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 FAM126BQ8IXS8 530 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 SIDT2Q8NBJ9 832 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 TNIP2Q8NFZ5 429 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 SDCCAG3Q96C92 435 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 CDKN2AIPNLQ96HQ2 116 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 OSBPL6Q9BZF3 934 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 MRM3Q9HC36 420 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 SYTL2Q9HCH5 934 aa12.56□□□□□ -0.4
LIG1-201ENST00000263274 SMPD3Q9NY59 655 aaPredicted RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 TRMT6Q9UJA5 497 aaKnown RBP12.56□□□□□ -0.4
LIG1-201ENST00000263274 CBX4O00257 560 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 OR1I1O60431 355 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 MAN1A2O60476 641 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 KCNH1O95259 989 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ATE1O95260 518 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 BMP2P12643 396 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 IDO1P14902 403 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ACADVLP49748 655 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 CSRP3P50461 194 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 IST1P53990 364 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ADAM17P78536 824 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 PURAQ00577 322 aaKnown RBP12.55□□□□□ -0.4
LIG1-201ENST00000263274 FAM110CQ1W6H9 321 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 TMTC4Q5T4D3 741 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 LDLRAD1Q5T700 205 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 PRMT9Q6P2P2 845 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 FAM171BQ6P995 826 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 MON1AQ86VX9 555 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ANKFN1Q8N957 763 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 DPF3Q92784 378 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.55□□□□□ -0.45e-11■■■■■ 94.1
LIG1-201ENST00000263274 PTPN18Q99952 460 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 APOL5Q9BWW9 433 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ACTR3BQ9P1U1 418 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.55□□□□□ -0.4
LIG1-201ENST00000263274 ANGPTL3Q9Y5C1 460 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 AQP12BA6NM10 295 aa12.55□□□□□ -0.4
LIG1-201ENST00000263274 ZBBXA8MT70 800 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms