RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SWT1Q5T5J6 900 aaKnown RBP19.04■□□□□ 0.64
UPF1-201ENST00000262803 FAM151BQ6UXP7 276 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 MTMR14Q8NCE2 650 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 UPF1Q92900 1129 aaKnown RBP eCLIP19.04■□□□□ 0.641e-10■■■■■ 36.9
UPF1-201ENST00000262803 RHOBTB2Q9BYZ6 727 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 NOL6Q9H6R4 1146 aaKnown RBP19.04■□□□□ 0.64
UPF1-201ENST00000262803 NID2Q14112 1375 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 IGLV3-22A0A075B6J6 115 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 MPSTP25325 297 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 CORO1AP31146 461 aaKnown RBP19.04■□□□□ 0.64
UPF1-201ENST00000262803 ADGRD1Q6QNK2 874 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 TMC5Q6UXY8 1006 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 BCL2L14Q9BZR8 327 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 PNPLA3Q9NST1 481 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 GMIPQ9P107 970 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 C2orf71A6NGG8 1288 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 MDM4O15151 490 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 LRIG2O94898 1065 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 GNPDA1P46926 289 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 DPYSQ14117 519 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 RTL4Q6ZR62 310 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 CUZD1Q86UP6 607 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 MAB21L3Q8N8X9 362 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 NPAS2Q99743 824 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 AGO3Q9H9G7 860 aaKnown RBP19.04■□□□□ 0.64
UPF1-201ENST00000262803 MIOSQ9NXC5 875 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 MAT2BQ9NZL9 334 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 CKLFQ9UBR5 152 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 EGFL7Q9UHF1 273 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 SSR3Q9UNL2 185 aa19.04■□□□□ 0.64
UPF1-201ENST00000262803 ARHGDIBP52566 201 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 LBX2Q6XYB7 198 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 C12orf65Q9H3J6 166 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 PNPLA8Q9NP80 782 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 GULP1Q9UBP9 304 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 PPIEQ9UNP9 301 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 SAMHD1Q9Y3Z3 626 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 NR2E1Q9Y466 385 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 A8MUI8 341 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 CST1P01037 141 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 CTPS1P17812 591 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 BRCC3P46736 316 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 RIPK1Q13546 671 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 SLC26A9Q7LBE3 791 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 PQLC1Q8N2U9 271 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 SLC4A11Q8NBS3 891 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 GPR156Q8NFN8 814 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 SLC9A7Q96T83 725 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 N6AMT1Q9Y5N5 214 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 COMMD3-BMI1R4GMX3 469 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 MFSD11O43934 449 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 SCN2BO60939 215 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 RFTN1Q14699 578 aaPredicted RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 NPY5RQ15761 445 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 RNASEH2BQ5TBB1 312 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 TMPRSS11AQ6ZMR5 421 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 RBM15BQ8NDT2 890 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 GOLGA2P5Q9HBQ8 144 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 IMP3Q9NV31 184 aaKnown RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 EHD3Q9NZN3 535 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 H0Y858 1186 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 MSX2P35548 267 aaPredicted RBP19.03■□□□□ 0.64
UPF1-201ENST00000262803 DNAJB8Q8NHS0 232 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 AZIN2Q96A70 460 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 HAVCR1Q96D42 359 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 QKIQ96PU8 341 aaKnown RBP eCLIP19.03■□□□□ 0.641e-8■□□□□ 10.8
UPF1-201ENST00000262803 ITGB1BP2Q9UKP3 347 aa19.03■□□□□ 0.64
UPF1-201ENST00000262803 GIMD1P0DJR0 217 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 PTX3P26022 381 aaPredicted RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 CDK9P50750 372 aaKnown RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 TREML2Q5T2D2 321 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 DNAJB7Q7Z6W7 309 aaPredicted RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 SLC30A8Q8IWU4 369 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 CLIP3Q96DZ5 547 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 SLC47A1Q96FL8 570 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 C7orf26Q96N11 449 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 AARSD1Q9BTE6 412 aaKnown RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 GBA3Q9H227 469 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 NOCTQ9UK39 431 aaKnown RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 MRC1P22897 1456 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 CCDC162PA2VCL2 907 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 FAM163BP0C2L3 166 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 STXBP1P61764 594 aaKnown RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 ZSWIM7Q19AV6 140 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 ANKRD22Q5VYY1 191 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 RBM44Q6ZP01 1051 aaKnown RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 JAZF1Q86VZ6 243 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 UNC5BQ8IZJ1 945 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 C1orf127Q8N9H9 656 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 TLCD1Q96CP7 247 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 C11orf84Q9BUA3 381 aaPredicted RBP19.02■□□□□ 0.64
UPF1-201ENST00000262803 FER1L4A9Z1Z3 1794 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 LGR5O75473 907 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 TRBC1P01850 177 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 L1CAMP32004 1257 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 PBX3P40426 434 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 PTGIRP43119 386 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 CPSF6Q16630 551 aaKnown RBP eCLIP19.02■□□□□ 0.64
UPF1-201ENST00000262803 TIGD2Q4W5G0 525 aa19.02■□□□□ 0.64
UPF1-201ENST00000262803 FAM98AQ8NCA5 519 aaKnown RBP19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms