RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NUDT21O43809 227 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 BRINP1O60477 761 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 USP12O75317 370 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 PMPCBO75439 489 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 DXOO77932 396 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 NFKB1P19838 968 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 MSNP26038 577 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 LSSP48449 732 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 PDX1P52945 283 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 DCDC1P59894 354 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 CTBSQ01459 385 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 TRIM74Q86UV6 250 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 CARD9Q9H257 536 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 UBP1Q9NZI7 540 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 TAAR2Q9P1P5 351 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 ZNF711Q9Y462 761 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 DSPP15924 2871 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 A0A1W2PQM1 296 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 TLX3O43711 291 aaPredicted RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 DNAJC6O75061 913 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 ATP1A1P05023 1023 aaKnown RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 PIRTP0C851 137 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 AK4P27144 223 aaPredicted RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 WNT3AP56704 352 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 GNG11P61952 73 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 DOK6Q6PKX4 331 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 PID1Q7Z2X4 250 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 GPR26Q8NDV2 337 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 ACTL9Q8TC94 416 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 OXNAD1Q96HP4 312 aaPredicted RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 OR2M4Q96R27 311 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 POLR1BQ9H9Y6 1135 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 RAD18Q9NS91 495 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 KLHL8Q9P2G9 620 aaPredicted RBP19.1■□□□□ 0.65
CLN3-260ENST00000637578 SHOC2Q9UQ13 582 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 ZKSCAN5Q9Y2L8 839 aa19.1■□□□□ 0.65
CLN3-260ENST00000637578 CHD6Q8TD26 2715 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 ARHGEF17Q96PE2 2063 aaPredicted RBP19.09■□□□□ 0.65
CLN3-260ENST00000637578 A0A1W2PNU3 283 aaPredicted RBP19.09■□□□□ 0.65
CLN3-260ENST00000637578 B4DGG1 531 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 INPP4BO15327 924 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 RBL1P28749 1068 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 CCL7P80098 99 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 LRP8Q14114 963 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 SPIDRQ14159 915 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 SEL1L2Q5TEA6 688 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 CCDC70Q6NSX1 233 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 IGF2-ASQ6U949 168 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 SNIP1Q8TAD8 396 aaKnown RBP19.09■□□□□ 0.65
CLN3-260ENST00000637578 ZDHHC1Q8WTX9 485 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 MRGPRX2Q96LB1 330 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 LRIT1Q9P2V4 623 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 PLEKHM1Q9Y4G2 1056 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 SPO11Q9Y5K1 396 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 OAS3Q9Y6K5 1087 aaKnown RBP19.09■□□□□ 0.65
CLN3-260ENST00000637578 RNF215Q9Y6U7 377 aa19.09■□□□□ 0.65
CLN3-260ENST00000637578 TJP3O95049 919 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 MPOP05164 745 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 CXCR5P32302 372 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 OTUD4Q01804 1114 aaKnown RBP19.08■□□□□ 0.65
CLN3-260ENST00000637578 MPP3Q13368 585 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 PEX6Q13608 980 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 NR1D2Q14995 579 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 TBC1D25Q3MII6 688 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 CCDC181Q5TID7 509 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 ZNF438Q7Z4V0 828 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 LSMEM2Q8N112 164 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 FGF11Q92914 225 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 ATXN7L3BQ96GX2 97 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 LRRN3Q9H3W5 708 aa19.08■□□□□ 0.65
CLN3-260ENST00000637578 SUDS3Q9H7L9 328 aaPredicted RBP19.08■□□□□ 0.65
CLN3-260ENST00000637578 PCYT1BQ9Y5K3 369 aaPredicted RBP19.08■□□□□ 0.65
CLN3-260ENST00000637578 TCRBV7S2A1N4TA0A589 114 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 AURKAO14965 403 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 HMGCLP35914 325 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 EIF2S3P41091 472 aaKnown RBP19.07■□□□□ 0.64
CLN3-260ENST00000637578 KLF1Q13351 362 aaPredicted RBP19.07■□□□□ 0.64
CLN3-260ENST00000637578 PDPK2PQ6A1A2 396 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 SLC30A9Q6PML9 568 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 SPRED1Q7Z699 444 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 CCNJLQ8IV13 435 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 NAGSQ8N159 534 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 TRAM1L1Q8N609 369 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 PRR11Q96HE9 360 aaPredicted RBP19.07■□□□□ 0.64
CLN3-260ENST00000637578 GFM1Q96RP9 751 aaKnown RBP19.07■□□□□ 0.64
CLN3-260ENST00000637578 GORASP1Q9BQQ3 440 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 ZSCAN5AQ9BUG6 496 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 GPR63Q9BZJ6 419 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 TRABDQ9H4I3 376 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 C10orf88Q9H8K7 445 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 RMI1Q9H9A7 625 aa19.07■□□□□ 0.64
CLN3-260ENST00000637578 D6RAR5 112 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 H7C0C1 242 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 RPLP0P05388 317 aaKnown RBP19.06■□□□□ 0.64
CLN3-260ENST00000637578 BPIP17213 487 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ACTN2P35609 894 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 ATP5OP48047 213 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 GABREP78334 506 aa19.06■□□□□ 0.64
CLN3-260ENST00000637578 B4GALNT1Q00973 533 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms