RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NXPH1P58417 271 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 RPS6P62753 249 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ZBED6P86452 979 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 EFNB1P98172 346 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 MGAT3Q09327 533 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 BYSLQ13895 437 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CYP2A13Q16696 494 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 FAM187BQ17R55 369 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ERCC6LQ2NKX8 1250 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DPCR1Q3MIW9 517 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PLAC9Q5JTB6 97 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CCDC158Q5M9N0 1113 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 C1QTNF12Q5T7M4 302 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 SP5Q6BEB4 398 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 GRHL2Q6ISB3 625 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ACSM6Q6P461 480 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CTR9Q6PD62 1173 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PCSK4Q6UW60 755 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PARM1Q6UWI2 310 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 C16orf89Q6UX73 402 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 KIAA1324Q6UXG2 1013 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DPY19L3Q6ZPD9 716 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 FAM83HQ6ZRV2 1179 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DTX2Q86UW9 622 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 MARCH9Q86YJ5 346 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PNPLA1Q8N8W4 532 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 POMGNT2Q8NAT1 580 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DNAAF1Q8NEP3 725 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DEFB124Q8NES8 71 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 GABPB2Q8TAK5 448 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CLEC4CQ8WTT0 213 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 GLMPQ8WWB7 406 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 DNAJB3Q8WWF6 145 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 FGF14Q92915 247 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ARHGEF2Q92974 986 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CLDN23Q96B33 292 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF653Q96CK0 615 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 RSPRY1Q96DX4 576 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 SAT2Q96F10 170 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 VMP1Q96GC9 406 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 KLHL15Q96M94 604 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 ALG8Q9BVK2 526 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 HERC2P3Q9BVR0 1158 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 APOL6Q9BWW8 343 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CRNKL1Q9BZJ0 848 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CLMPQ9H6B4 373 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 LTB4R2Q9NPC1 389 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 CCDC177Q9NQR7 707 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PRMT8Q9NR22 394 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 VSX1Q9NZR4 365 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 NYAP2Q9P242 653 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 PEMTQ9UBM1 199 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 SLC25A10Q9UBX3 287 aaPredicted RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 KLQ9UEF7 1012 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 URB1O60287 2271 aaKnown RBP3.91□□□□□ -1.78
LIMA1-208ENST00000551691 FBN2P35556 2912 aa3.91□□□□□ -1.78
LIMA1-208ENST00000551691 MIA3Q5JRA6 1907 aa3.9□□□□□ -1.78
LIMA1-208ENST00000551691 IGKV6D-41A0A0C4DH26 115 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 FAM237BA0A1B0GVD1 139 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 GAGE12BA1L429 117 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 GAGE12HA6NDE8 117 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 LRRC53A6NM62 1247 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 TEX22C9J3V5 150 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ANHXE9PGG2 379 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 H7C0S8 307 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CEP104O60308 925 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 RFPL2O75678 378 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NCR1O76036 304 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 EIF2S1P05198 315 aaKnown RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SCG2P13521 617 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 BMP5P22003 454 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 GATA3P23771 443 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 MCM3P25205 808 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 DDX6P26196 483 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 EEF1DP29692 281 aaKnown RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 HOXC8P31273 242 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 FMO4P31512 558 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 DPP6P42658 865 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 MATR3P43243 847 aaKnown RBP eCLIP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 OLR1P78380 273 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 E2F1Q01094 437 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ROR1Q01973 937 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 RESTQ13127 1097 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 IL13RA2Q14627 380 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SMC1AQ14683 1233 aaKnown RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 MLF2Q15773 248 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 GSTA3Q16772 222 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 AP5B1Q2VPB7 878 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 EDRF1Q3B7T1 1238 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ZSCAN23Q3MJ62 389 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 COLEC12Q5KU26 742 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ZKSCAN2Q63HK3 967 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NAIF1Q69YI7 327 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CDC73Q6P1J9 531 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM81Q6P7N7 255 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 KLHL35Q6PF15 583 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NCEH1Q6PIU2 408 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SARM1Q6SZW1 724 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 FAM47EQ6ZV65 393 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 PTCHD4Q6ZW05 846 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms