RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	HSD3B7	Q9H2F3	369 aa		13.57	□□□□□ -0.24
SAMM50-204	ENST00000493161	SARS2	Q9NP81	518 aa	Known RBP	13.57	□□□□□ -0.24
SAMM50-204	ENST00000493161	SIDT1	Q9NXL6	827 aa	Known RBP	13.57	□□□□□ -0.24
SAMM50-204	ENST00000493161	CNOT8	Q9UFF9	292 aa	Known RBP	13.57	□□□□□ -0.24
SAMM50-204	ENST00000493161	KCNMB2	Q9Y691	235 aa		13.57	□□□□□ -0.24
SAMM50-204	ENST00000493161	USP9Y	O00507	2555 aa	Predicted RBP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161		A0A0J9YYE9	177 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	LRRC10B	A6NIK2	292 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	FADS2P1	A8MWK0	482 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	POLR1C	O15160	346 aa	Predicted RBP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	CLDN7	O95471	211 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	PRL	P01236	227 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	TRBC1	P01850	177 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	FTL	P02792	175 aa	Predicted RBP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	NFKBIA	P25963	317 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	DSC2	Q02487	901 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	RALGPS1	Q5JS13	557 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	E4F1	Q66K89	784 aa	Predicted RBP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF765	Q7L2R6	523 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF571	Q7Z3V5	609 aa	Predicted RBP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	TEX26	Q8N6G2	289 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	EXD1	Q8NHP7	514 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	LRRN4	Q8WUT4	740 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZPBP	Q9BS86	351 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	OGFR	Q9NZT2	677 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	MYO1A	Q9UBC5	1043 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	CHKB	Q9Y259	395 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	RPS6KL1	Q9Y6S9	549 aa		13.56	□□□□□ -0.24
SAMM50-204	ENST00000493161	LRRC53	A6NM62	1247 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	DDX3X	O00571	662 aa	Known RBP eCLIP	13.55	□□□□□ -0.24	8e-16	■■■■■ 46.7
SAMM50-204	ENST00000493161	PDGFA	P04085	211 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	KRT7	P08729	469 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	RARA	P10276	462 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ATP1A3	P13637	1013 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ARL4A	P40617	200 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF135	P52742	658 aa	Predicted RBP	13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	CDH6	P55285	790 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	SH3BP2	P78314	561 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	FOXM1	Q08050	763 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ITK	Q08881	620 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	KLRB1	Q12918	225 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ERV3-1	Q14264	604 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	C4orf17	Q53FE4	359 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF648	Q5T619	568 aa	Predicted RBP	13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	NLRP8	Q86W28	1048 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	BBS5	Q8N3I7	341 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF653	Q96CK0	615 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	EFHD1	Q9BUP0	239 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ULBP3	Q9BZM4	244 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	HAUS4	Q9H6D7	363 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	PCDH18	Q9HCL0	1135 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	ARFGAP3	Q9NP61	516 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	PRDM8	Q9NQV8	689 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	SCHIP1	Q9P0W5	487 aa	Predicted RBP	13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	VPS18	Q9P253	973 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	CROT	Q9UKG9	612 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	SLC30A1	Q9Y6M5	507 aa		13.55	□□□□□ -0.24
SAMM50-204	ENST00000493161	USP9X	Q93008	2570 aa	Predicted RBP	13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	CCDC172	P0C7W6	258 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	F3	P13726	295 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	ZNF30	P17039	623 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	IL4R	P24394	825 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	MAN1A1	P33908	653 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	PCK1	P35558	622 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	DLST	P36957	453 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	UQCRFS1	P47985	274 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	CD97	P48960	835 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	EPHB1	P54762	984 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	EPHA4	P54764	986 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	MC1R	Q01726	317 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	NIPAL4	Q0D2K0	466 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	MMRN1	Q13201	1228 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	CRTC2	Q53ET0	693 aa	Predicted RBP	13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	FAM182A	Q5T1J6	154 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	LYSMD3	Q7Z3D4	306 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	SLC9B2	Q86UD5	537 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	ESX1	Q8N693	406 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	GALNT6	Q8NCL4	622 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	NSMCE1	Q8WV22	266 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	ELMO2	Q96JJ3	720 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	PLEKHG4B	Q96PX9	1271 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	TDRD1	Q9BXT4	1180 aa	Known RBP	13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	TRIT1	Q9H3H1	467 aa	Known RBP	13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	DTL	Q9NZJ0	730 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	CPNE7	Q9UBL6	633 aa		13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	MN1	Q10571	1320 aa	Predicted RBP	13.54	□□□□□ -0.24
SAMM50-204	ENST00000493161	MFSD11	O43934	449 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	C9	P02748	559 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	CD48	P09326	243 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	TYRP1	P17643	537 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	CDK11B	P21127	795 aa	Known RBP	13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	LEPR	P48357	1165 aa	Known RBP	13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	SEPHS1	P49903	392 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	UBE2I	P63279	158 aa	Known RBP	13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	MYL5	Q02045	173 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	SEPT6	Q14141	434 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	MAP7	Q14244	749 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	BOLA3	Q53S33	107 aa		13.53	□□□□□ -0.24
SAMM50-204	ENST00000493161	HENMT1	Q5T8I9	393 aa	Known RBP	13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms