RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 NDUFAF1Q9Y375 327 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 IL1BP01584 269 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 PCNAP12004 261 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 XPAP23025 273 aaPredicted RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 NFKBIAP25963 317 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 PRKAA2P54646 552 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 TLE2Q04725 743 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 CLCQ05315 142 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 HSPA14Q0VDF9 509 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 LYSMD3Q7Z3D4 306 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 RALGPS2Q86X27 583 aaPredicted RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 PTCD2Q8WV60 388 aaKnown RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 NCLNQ969V3 563 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 DCUN1D1Q96GG9 259 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 SLC39A13Q96H72 371 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 C1orf74Q96LT6 269 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 MFSD1Q9H3U5 465 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 STK39Q9UEW8 545 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 AP4S1Q9Y587 144 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 RNASEH1O60930 286 aaKnown RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 SEC24AO95486 1093 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 KLKB1P03952 638 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 BOP1Q14137 746 aaKnown RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 OTUD3Q5T2D3 398 aaPredicted RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 DNAJB7Q7Z6W7 309 aaPredicted RBP11.92□□□□□ -0.5
SMPD4-213ENST00000454468 PKP2Q99959 881 aa11.92□□□□□ -0.5
SMPD4-213ENST00000454468 LOC285556D6RIA3 1793 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 TPD52L2O43399 206 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 CLDN11O75508 207 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 ECI2O75521 394 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 IGLV3-25P01717 112 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 PKMP14618 531 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 SLC2A4P14672 509 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 TPP2P29144 1249 aaPredicted RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 CSKP41240 450 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 LEPRP48357 1165 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 EPHB3P54753 998 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 MTTPP55157 894 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 TBCELQ5QJ74 424 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 DHFR2Q86XF0 187 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 BCL7CQ8WUZ0 217 aaPredicted RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 NUDT8Q8WV74 236 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 GFM2Q969S9 779 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 PKMYT1Q99640 499 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 TBCDQ9BTW9 1192 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 SLC25A23Q9BV35 468 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 GRIP2Q9C0E4 1043 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 LSM7Q9UK45 103 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 GSTA4O15217 222 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 MTX2O75431 263 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 ATP5BP06576 529 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 IMPDH1P20839 514 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 HOXC8P31273 242 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 HSPA7P48741 367 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 KPNA1P52294 538 aaPredicted RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 FRG1Q14331 258 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 ZBTB49Q6ZSB9 765 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 PGAM4Q8N0Y7 254 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 MRPS31Q92665 395 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 LRCH3Q96II8 777 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 FAR2Q96K12 515 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 PPM1MQ96MI6 270 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 CENPKQ9BS16 269 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 THUMPD3Q9BV44 507 aaKnown RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 C1orf21Q9H246 121 aa11.91□□□□□ -0.5
SMPD4-213ENST00000454468 CORO1CQ9ULV4 474 aaPredicted RBP11.91□□□□□ -0.5
SMPD4-213ENST00000454468 GNGT2O14610 69 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MTHFD1P11586 935 aaKnown RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 EEF1B2P24534 225 aaKnown RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 BCL2L1Q07817 233 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 IKBKEQ14164 716 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 UNC50Q53HI1 259 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MANEALQ5VSG8 457 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF549Q6P9A3 640 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 LRRC43Q8N309 656 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF366Q8N895 744 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 PBXIP1Q96AQ6 731 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 VPS50Q96JG6 964 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 GPR78Q96P69 363 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MRPL9Q9BYD2 267 aaKnown RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 CIPCQ9C0C6 399 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MAGEH1Q9H213 219 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ZDHHC6Q9H6R6 413 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 SPAG4Q9NPE6 437 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MARCH5Q9NX47 278 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 CFAP97Q9P2B7 532 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 AP4B1Q9Y6B7 739 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 A0A1B0GVM2 712 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF840PA6NDX5 716 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 TCAF2A6NFQ2 919 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 FAM155AB1AL88 458 aaPredicted RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 NPHS1O60500 1241 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 STC2O76061 302 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 CDK14O94921 469 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 LRG1P02750 347 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 MMP2P08253 660 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 LINGO3P0C6S8 592 aa11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ATXN1LP0C7T5 689 aaKnown RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 ZNF37AP17032 561 aaPredicted RBP11.9□□□□□ -0.5
SMPD4-213ENST00000454468 LBPP18428 481 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms