RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 TCRBV7S3A2A0A539 114 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 FAM149AA5PLN7 773 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 LMO7DNF2Z398 122 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 F5H423 210 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 MATN3O15232 486 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 MTSS1O43312 755 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 HOXC4P09017 264 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 ELFN1P0C7U0 828 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 PSMB4P28070 264 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 CD68P34810 354 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 MMP13P45452 471 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 RPIAP49247 311 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 IFI35P80217 286 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 BASP1P80723 227 aaKnown RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 TARDBPQ13148 414 aaKnown RBP eCLIP12.64□□□□□ -0.39
PNKP-217ENST00000625216 INPP5AQ14642 412 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 KCNJ11Q14654 390 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 MAP9Q49MG5 647 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 HES3Q5TGS1 186 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 TIGD7Q6NT04 549 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 LIPIQ6XZB0 460 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 PHACTR4Q8IZ21 702 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 CNTD1Q8N815 330 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 NAT8LQ8N9F0 302 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 BBOF1Q8ND07 529 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 CAVIN3Q969G5 261 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 PWWP2AQ96N64 755 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 FMO2Q99518 471 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 GORASP1Q9BQQ3 440 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 APOOQ9BUR5 198 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 FAM129AQ9BZQ8 928 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 NRSN2Q9GZP1 204 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 NOD2Q9HC29 1040 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 RAB6BQ9NRW1 208 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 KLHL8Q9P2G9 620 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 APOBEC3BQ9UH17 382 aaKnown RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 ANAPC5Q9UJX4 755 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 PHTF1Q9UMS5 762 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 SHOC2Q9UQ13 582 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 DMXL2Q8TDJ6 3036 aa12.64□□□□□ -0.39
PNKP-217ENST00000625216 ARID1BQ8NFD5 2236 aaPredicted RBP12.64□□□□□ -0.39
PNKP-217ENST00000625216 DOCK9Q9BZ29 2069 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 TAF4O00268 1085 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ZZEF1O43149 2961 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ZNF189O75820 626 aaPredicted RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 NEBLO76041 1014 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 RECQL5O94762 991 aaPredicted RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 STK10O94804 968 aaKnown RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 RASGRP1O95267 797 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 JCHAINP01591 159 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 HLA-DQB2P05538 268 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ANXA6P08133 673 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 KELP23276 732 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ACTN2P35609 894 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 MAGEA6P43360 314 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 HK3P52790 923 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 INSM1Q01101 510 aaPredicted RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 RALGDSQ12967 914 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 NFATC4Q14934 902 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 MORF4L2Q15014 288 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ELOCQ15369 112 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 TEX44Q53QW1 395 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 PRRT3Q5FWE3 981 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 EMBQ6PCB8 327 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 LVRNQ6Q4G3 990 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ARHGEF18Q6ZSZ5 1173 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 MARCH9Q86YJ5 346 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 PPIL6Q8IXY8 311 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 NDUFAF2Q8N183 169 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 PGBD5Q8N414 524 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 FSTL5Q8N475 847 aaPredicted RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 DCBLD1Q8N8Z6 715 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 MDM1Q8TC05 714 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 SCG3Q8WXD2 468 aaKnown RBP12.63□□□□□ -0.39
PNKP-217ENST00000625216 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.63□□□□□ -0.39
PNKP-217ENST00000625216 NSMCE3Q96MG7 304 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 GBA3Q9H227 469 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ETNK1Q9HBU6 452 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 ZNF446Q9NWS9 450 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 CLCA2Q9UQC9 943 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 COQ6Q9Y2Z9 468 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 PCDHGC4Q9Y5F7 938 aa12.63□□□□□ -0.39
PNKP-217ENST00000625216 LY6G6EA0A0G2JKS1 128 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 EME2A4GXA9 379 aaPredicted RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 CACNB4O00305 520 aaPredicted RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 OPA1O60313 960 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 MT-CO3P00414 261 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 CPP00450 1065 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 PRKCGP05129 697 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 ALPIP09923 528 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 CYP2A6P11509 494 aaPredicted RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 CCNB1P14635 433 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 NFKB1P19838 968 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 VIPR1P32241 457 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 TRIM23P36406 574 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 FDFT1P37268 417 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 TNNT3P45378 269 aaPredicted RBP12.62□□□□□ -0.39
PNKP-217ENST00000625216 CAV1Q03135 178 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 CYP4F3Q08477 520 aa12.62□□□□□ -0.39
PNKP-217ENST00000625216 SEMA5AQ13591 1074 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms