RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 UBA2Q9UBT2 640 aaPredicted RBP11.68□□□□□ -0.54
CLK3-222ENST00000568232 B4GALT6Q9UBX8 382 aa11.68□□□□□ -0.54
CLK3-222ENST00000568232 AJAP1Q9UKB5 411 aaPredicted RBP11.68□□□□□ -0.54
CLK3-222ENST00000568232 ZNF451Q9Y4E5 1061 aa11.68□□□□□ -0.54
CLK3-222ENST00000568232 CROCCQ5TZA2 2017 aa11.68□□□□□ -0.54
CLK3-222ENST00000568232 A6NL46 340 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 SPAG6O75602 509 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 VARSP26640 1264 aaKnown RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 SERPINA4P29622 427 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 HNRNPH3P31942 346 aaKnown RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 SCNN1AP37088 669 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 ETV3P41162 512 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 IL10RAQ13651 578 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 PTPRRQ15256 657 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 CNGA3Q16281 694 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 PLEKHN1Q494U1 663 aaPredicted RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 THSD4Q6ZMP0 1018 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 HSD11B1LQ7Z5J1 315 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 TRIM74Q86UV6 250 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 PAF1Q8N7H5 531 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 RTL3Q8N8U3 475 aaKnown RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 TSEN2Q8NCE0 465 aaKnown RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 FDCSPQ8NFU4 85 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 THAP4Q8WY91 577 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 PNPLA2Q96AD5 504 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 ECHDC3Q96DC8 303 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 TUBGCP5Q96RT8 1024 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 NUDT9Q9BW91 350 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 ATP13A3Q9H7F0 1226 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 TMEM51Q9NW97 253 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLK3-222ENST00000568232 PCYT1BQ9Y5K3 369 aaPredicted RBP11.67□□□□□ -0.54
CLK3-222ENST00000568232 DNHD1Q96M86 4753 aa11.67□□□□□ -0.54
CLK3-222ENST00000568232 TTC24A2A3L6 582 aaPredicted RBP11.66□□□□□ -0.54
CLK3-222ENST00000568232 TIAF1O95411 115 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 ANKRD34CP0C6C1 535 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 PTGIRP43119 386 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 ITGA1P56199 1179 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 CDK18Q07002 472 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 BCL2L1Q07817 233 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 ZXDCQ2QGD7 858 aaPredicted RBP11.66□□□□□ -0.54
CLK3-222ENST00000568232 CCDC14Q49A88 953 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 PYCR3Q53H96 274 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 RAET1GQ6H3X3 334 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 TTI2Q6NXR4 508 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 IYDQ6PHW0 289 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 RFLNAQ6ZTI6 216 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 TMEM35BQ8NCS4 154 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 SCARF2Q96GP6 870 aaPredicted RBP11.66□□□□□ -0.54
CLK3-222ENST00000568232 POM121Q96HA1 1249 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 C9orf72Q96LT7 481 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 PDFQ9HBH1 243 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 SARS2Q9NP81 518 aaKnown RBP11.66□□□□□ -0.54
CLK3-222ENST00000568232 METTL5Q9NRN9 209 aaKnown RBP11.66□□□□□ -0.54
CLK3-222ENST00000568232 OGFRQ9NZT2 677 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 TBC1D29Q9UFV1 150 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 PRKAB1Q9Y478 270 aa11.66□□□□□ -0.54
CLK3-222ENST00000568232 MN1Q10571 1320 aaPredicted RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 A0A0U1RQS6 177 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 GOLGA6L3A6NEY3 463 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 C21orf140B9A014 251 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 FOXN3O00409 490 aaPredicted RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 TRAFD1O14545 582 aaPredicted RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 PSMA7O14818 248 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 ZNF185O15231 689 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 LRRTM2O43300 516 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 KIF1CO43896 1103 aaKnown RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 DIAPH2O60879 1101 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 CEACAM4O75871 244 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 TYRP1P17643 537 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 TNFAIP3P21580 790 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 PTPN4P29074 926 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 EPHB2P29323 1055 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 YBEYP58557 167 aaPredicted RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 POLR2LP62875 67 aaKnown RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 RAPSNQ13702 412 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 ELOAQ14241 798 aaKnown RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 IL11RAQ14626 422 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 KLHL10Q6JEL2 608 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 Q6ZVL8 140 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 PLXDC1Q8IUK5 500 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 RHOT1Q8IXI2 618 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 CBARPQ8N350 705 aaPredicted RBP11.65□□□□□ -0.54
CLK3-222ENST00000568232 GPT2Q8TD30 523 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 RXFP2Q8WXD0 754 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 DTD2Q96FN9 168 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 TGM7Q96PF1 710 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 GSDMAQ96QA5 445 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 BRD8Q9H0E9 1235 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 PDCL3Q9H2J4 239 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 APEX2Q9UBZ4 518 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 CD84Q9UIB8 345 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 PCDHGB7Q9Y5F8 929 aa11.65□□□□□ -0.54
CLK3-222ENST00000568232 PRSS44E7EML9 344 aa11.64□□□□□ -0.55
CLK3-222ENST00000568232 SNX2O60749 519 aa11.64□□□□□ -0.55
CLK3-222ENST00000568232 HEXIM1O94992 359 aaKnown RBP11.64□□□□□ -0.55
CLK3-222ENST00000568232 SOD1P00441 154 aa11.64□□□□□ -0.55
CLK3-222ENST00000568232 C9P02748 559 aa11.64□□□□□ -0.55
CLK3-222ENST00000568232 FGF5P12034 268 aa11.64□□□□□ -0.55
CLK3-222ENST00000568232 LHCGRP22888 699 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms