RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KDELC1Q6UW63 502 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 TMC3Q7Z5M5 1100 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CCDC50Q8IVM0 306 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 DTX3LQ8TDB6 740 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 UBE2Q2Q8WVN8 375 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 HTR3CQ8WXA8 447 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CCDC74AQ96AQ1 378 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 EID2BQ96D98 161 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 OR2M4Q96R27 311 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 FCRL5Q96RD9 977 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 FAM83DQ9H4H8 585 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 POLR1BQ9H9Y6 1135 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 SEPT10Q9P0V9 454 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 GULP1Q9UBP9 304 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 FAM153AQ9UHL3 310 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CD84Q9UIB8 345 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CNOT6Q9ULM6 557 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 ENTPD2Q9Y5L3 495 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 DUSP10Q9Y6W6 482 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 NBEAQ8NFP9 2946 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GRID2IPA4D2P6 1211 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GOLGA6CA6NDK9 693 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GOLGA6BA6NDN3 693 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 D6RAR5 112 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 TMX2-CTNND1H3BSU7 103 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 BRINP1O60477 761 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GOLGA6DP0CG33 693 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ACTN2P35609 894 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ADCY8P40145 1251 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GNPDA1P46926 289 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 PDX1P52945 283 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 RWDD2BP57060 319 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ERVPABLB-1P60509 514 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 SPIDRQ14159 915 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GALNT3Q14435 633 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 PYCR3Q53H96 274 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 LYSMD3Q7Z3D4 306 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ACRBPQ8NEB7 543 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 SPATA22Q8NHS9 363 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 CCL4L1Q8NHW4 92 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 LIN37Q96GY3 246 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ZNF578Q96N58 590 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 AGAP2Q99490 1192 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ZSCAN5AQ9BUG6 496 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 OSBPL8Q9BZF1 889 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 TRABDQ9H4I3 376 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 GOLGA6AQ9NYA3 693 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 TAAR2Q9P1P5 351 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 SIRPGQ9P1W8 387 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 RABGEF1Q9UJ41 708 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ZNF711Q9Y462 761 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ST14Q9Y5Y6 855 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 AK5Q9Y6K8 562 aa15.94■□□□□ 0.14
CCDC88C-209ENST00000554872 ZFYVE26Q68DK2 2539 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 FADS2P1A8MWK0 482 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 MIF4GDA9UHW6 222 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 USP12O75317 370 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 MT-CYBP00156 380 aaPredicted RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 FGF1P05230 155 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 CCKBRP32239 447 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 EIF2S3P41091 472 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 CTBSQ01459 385 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 EIF3IQ13347 325 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 MPP3Q13368 585 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 SPRED1Q7Z699 444 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 SYCE1Q8N0S2 351 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 ZNF567Q8N184 647 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 PTCD2Q8WV60 388 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 ALG3Q92685 438 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 FGF11Q92914 225 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 PLEKHG4BQ96PX9 1271 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 DPEP2Q9H4A9 486 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 SPATS2LQ9NUQ6 558 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 HACD3Q9P035 362 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 MOSPD1Q9UJG1 213 aa15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 URB1O60287 2271 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-209ENST00000554872 ARHGEF17Q96PE2 2063 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 A0A1W2PQM1 296 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 B4DGG1 531 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 TLX3O43711 291 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 DNAJC6O75061 913 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 NFKB1P19838 968 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 HLA-DPA1P20036 260 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 HMGCLP35914 325 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 CETN2P41208 172 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 GPR3P46089 330 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 POLD2P49005 469 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 WNT3AP56704 352 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 GABREP78334 506 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 KIF5AQ12840 1032 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 PCSK7Q16549 785 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 ZDHHC20Q5W0Z9 365 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 CCDC70Q6NSX1 233 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 KIAA1328Q86T90 577 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 ZC3H18Q86VM9 953 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 GALNT13Q8IUC8 556 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 CCNJLQ8IV13 435 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 TRAM1L1Q8N609 369 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 ZDHHC1Q8WTX9 485 aa15.92■□□□□ 0.14
CCDC88C-209ENST00000554872 GFM1Q96RP9 751 aaKnown RBP15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms