RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 LPCAT1Q8NF37 534 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 TEX47Q8TBZ9 253 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 CDK5RAP1Q96SZ6 601 aaKnown RBP8.9□□□□□ -0.99
VCL-206ENST00000623461 GTF2A1LQ9UNN4 478 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 PLCL2Q9UPR0 1127 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 SLC9A8Q9Y2E8 581 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 H0Y858 1186 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 REM1O75628 298 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 CDH1P12830 882 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 EPB42P16452 691 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 CD36P16671 472 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 TTPAP49638 278 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 VBP1P61758 197 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 KCNA10Q16322 511 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 TIGD2Q4W5G0 525 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 TRIM40Q6P9F5 258 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 ADAMTSL2Q86TH1 951 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 TXNRD3Q86VQ6 643 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 DNAJB8Q8NHS0 232 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 DCAKDQ8WVC6 231 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 QRFPRQ96P65 431 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 PKP2Q99959 881 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 POLR1EQ9GZS1 481 aaKnown RBP8.9□□□□□ -0.99
VCL-206ENST00000623461 SDCBP2Q9H190 292 aa8.9□□□□□ -0.99
VCL-206ENST00000623461 J3QRK9 145 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 GCATO75600 419 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 NFIXQ14938 502 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PGM5Q15124 567 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ZNF181Q2M3W8 571 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 SULT1C3Q6IMI6 304 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 RELL1Q8IUW5 271 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 TWIST2Q8WVJ9 160 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ELMO3Q96BJ8 720 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 FBXL8Q96CD0 374 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ZNF347Q96SE7 839 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 RASSF1Q9NS23 344 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 MICAL3Q7RTP6 2002 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ACKR2O00590 384 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ABCB7O75027 752 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 APOL3O95236 402 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 RHOCP08134 193 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 RHAGQ02094 409 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 MAB21L1Q13394 359 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ATP13A5Q4VNC0 1218 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 COLEC12Q5KU26 742 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ERAP2Q6P179 960 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ATL1Q8WXF7 558 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ANKRA2Q9H9E1 313 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 MED11Q9P086 117 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 GON4LQ3T8J9 2241 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PSIP1O75475 530 aaKnown RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 CDH8P55286 799 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 TGFB2P61812 414 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 SUZ12Q15022 739 aaKnown RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 TGFBIQ15582 683 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 VPS26BQ4G0F5 336 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 TMEM161BQ8NDZ6 487 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PJA1Q8NG27 643 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 SERPINB11Q96P15 392 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PDCD2LQ9BRP1 358 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ARHGAP23Q9P227 1491 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 BCAS2O75934 225 aaPredicted RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 ARL4DP49703 201 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 THOP1P52888 689 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ATN1P54259 1190 aaPredicted RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 EEFSECP57772 596 aaKnown RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 ZNF45Q02386 682 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PEX6Q13608 980 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 MYBPC3Q14896 1274 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 MGAT5BQ3V5L5 792 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 TPRG1LQ5T0D9 272 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 LYPLAL1Q5VWZ2 237 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 SEPT5Q99719 369 aaPredicted RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 EBF4Q9BQW3 602 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PRDM12Q9H4Q4 367 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 EI24O14681 340 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 C7P10643 843 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 SLC15A1P46059 708 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 FOXM1Q08050 763 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PIK3R6Q5UE93 754 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 ANKRD22Q5VYY1 191 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 FEM1CQ96JP0 617 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PANX1Q96RD7 426 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PTPN5P54829 565 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 CYP2W1Q8TAV3 490 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 KCNS3Q9BQ31 491 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 GATA5Q9BWX5 397 aaPredicted RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 RACGAP1Q9H0H5 632 aa8.89□□□□□ -0.99
VCL-206ENST00000623461 PARP4Q9UKK3 1724 aaKnown RBP8.89□□□□□ -0.99
VCL-206ENST00000623461 TISP43B9A030 160 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 ZBTB14O43829 449 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 CYP11A1P05108 521 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FGRP09769 529 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PEPDP12955 493 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 RHOAP61586 193 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PITPNAQ00169 270 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 SLC18A2Q05940 514 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 GALNT3Q14435 633 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 PLEKHG4Q58EX7 1191 aa8.88□□□□□ -0.99
VCL-206ENST00000623461 FAM180AQ6UWF9 173 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms