RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 RFC1P35251 1148 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 BSGP35613 385 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 STAT6P42226 847 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 LMAN1P49257 510 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 SLC12A3P55017 1021 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 SOX8P57073 446 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TLE1Q04724 770 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 MBTD1Q05BQ5 628 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 PTPAQ15257 358 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 SMU1Q2TAY7 513 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 DCAF4L1Q3SXM0 396 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TMEM119Q4V9L6 283 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TOR1AIP1Q5JTV8 583 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TMTC4Q5T4D3 741 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 FAXCQ5TGI0 409 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 KRT80Q6KB66 452 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 MTFR2Q6P444 385 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 ZNF572Q7Z3I7 529 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 GPBP1Q86WP2 473 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 PPP1R3BQ86XI6 285 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 YAF2Q8IY57 180 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TDRD5Q8NAT2 981 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 ZBTB44Q8NCP5 570 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 LINC00301Q8NCQ3 95 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 DENND6BQ8NEG7 585 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 GPR150Q8NGU9 434 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 GABPB2Q8TAK5 448 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 CASKIN2Q8WXE0 1202 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 LARP4BQ92615 738 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 RAD54LQ92698 747 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 C3orf49Q96BT1 292 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 CPB2Q96IY4 423 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 ZNF512Q96ME7 567 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 CASD1Q96PB1 797 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 USP28Q96RU2 1077 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 NTPCRQ9BSD7 190 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 TCHPQ9BT92 498 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 APOL6Q9BWW8 343 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TEX12Q9BXU0 123 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 MMADHCQ9H3L0 296 aaPredicted RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 TASP1Q9H6P5 420 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 MINDY3Q9H8M7 445 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 PARVGQ9HBI0 331 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 SNTG1Q9NSN8 517 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 TBC1D23Q9NUY8 699 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 SPG21Q9NZD8 308 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 HPCAL4Q9UM19 191 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 ZFR2Q9UPR6 939 aaKnown RBP6.24□□□□□ -1.41
VPS53-212ENST00000572259 KLHL20Q9Y2M5 609 aa6.24□□□□□ -1.41
VPS53-212ENST00000572259 ZMYM2Q9UBW7 1377 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 EPOPA6NHQ4 379 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 SAC3D1A6NKF1 404 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 TSPAN4O14817 238 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 PCDH17O14917 1159 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 CASQ2O14958 399 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 PRICKLE3O43900 615 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 MFAP3LO75121 409 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ZC3H11AO75152 810 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS53-212ENST00000572259 GUCY1B2O75343 617 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 KRT38O76015 456 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ABHD16AO95870 558 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 OPN1MWP04001 364 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 AMY1AP04745 511 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 OPN1MW2P0DN77 364 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 OPN1MW3P0DN78 364 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 KCNA5P22460 613 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 MATR3P43243 847 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS53-212ENST00000572259 ME1P48163 572 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 GATMP50440 423 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 SLC26A5P58743 744 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 STARD6P59095 220 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 NUCB2P80303 420 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 MRPS5P82675 430 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 HTD2P86397 168 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 HHEXQ03014 270 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 NSUN2Q08J23 767 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS53-212ENST00000572259 TARDBPQ13148 414 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS53-212ENST00000572259 DCTN2Q13561 401 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 GIT2Q14161 759 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 NFE2L1Q14494 772 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 LASP1Q14847 261 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 KARSQ15046 597 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 KYAT1Q16773 422 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 SLC5A9Q2M3M2 681 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ALG11Q2TAA5 492 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 CLLU1OSQ5K130 101 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ATF7IP2Q5U623 682 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 AFMIDQ63HM1 303 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 FAM173BQ6P4H8 233 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 KIAA0408Q6ZU52 694 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 STXBP4Q6ZWJ1 553 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 LIMS2Q7Z4I7 341 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 GPR149Q86SP6 731 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 IQUBQ8NA54 791 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 COLGALT1Q8NBJ5 622 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 POGLUT1Q8NBL1 392 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 MRPS27Q92552 414 aaKnown RBP6.23□□□□□ -1.41
VPS53-212ENST00000572259 RMDN1Q96DB5 314 aa6.23□□□□□ -1.41
VPS53-212ENST00000572259 EPSTI1Q96J88 318 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms