RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 BEST2Q8NFU1 509 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 ZNRF4Q8WWF5 429 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 SH3KBP1Q96B97 665 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 SENP5Q96HI0 755 aaPredicted RBP2.45□□□□□ -2.02
SPG11-222ENST00000560435 PCYT2Q99447 389 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 LMAN2LQ9H0V9 348 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 BICC1Q9H694 974 aaKnown RBP2.45□□□□□ -2.02
SPG11-222ENST00000560435 ARFGAP3Q9NP61 516 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 MMP25Q9NPA2 562 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 BABAM1Q9NWV8 329 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 ACAD8Q9UKU7 415 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 PYGO1Q9Y3Y4 419 aa2.45□□□□□ -2.02
SPG11-222ENST00000560435 CLIC2O15247 247 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 ZNF23P17027 643 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 POLR2CP19387 275 aaPredicted RBP2.44□□□□□ -2.02
SPG11-222ENST00000560435 AGAP20933 346 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 AARSP49588 968 aaKnown RBP eCLIP2.44□□□□□ -2.02
SPG11-222ENST00000560435 TUBB8Q3ZCM7 444 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 TMEM35AQ53FP2 167 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 ZDHHC20Q5W0Z9 365 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 LRRC8EQ6NSJ5 796 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 LINGO2Q7L985 606 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 ATG16L2Q8NAA4 619 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 OR2T6Q8NHC8 308 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 GRHL3Q8TE85 626 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 CNOT9Q92600 299 aaKnown RBP2.44□□□□□ -2.02
SPG11-222ENST00000560435 SIN3AQ96ST3 1273 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 CLSTN3Q9BQT9 956 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 TAF1DQ9H5J8 278 aaPredicted RBP2.44□□□□□ -2.02
SPG11-222ENST00000560435 DACT1Q9NYF0 836 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 ACSL5Q9ULC5 683 aa2.44□□□□□ -2.02
SPG11-222ENST00000560435 EXOGQ9Y2C4 368 aaKnown RBP2.44□□□□□ -2.02
SPG11-222ENST00000560435 PTPRCP08575 1304 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 A0A087WV62 115 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 ZCWPW2A0A1B0GU75 182 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 PABPN1LA6NDY0 278 aaKnown RBP2.43□□□□□ -2.02
SPG11-222ENST00000560435 TMEM202A6NGA9 273 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 HMX3A6NHT5 357 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 ZFAND5O76080 213 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 TSHBP01222 138 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 EDN1P05305 212 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 NR2C2P49116 596 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 METAP2P50579 478 aaKnown RBP eCLIP2.43□□□□□ -2.02
SPG11-222ENST00000560435 BMXP51813 675 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 PRKAA2P54646 552 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 CHRNDQ07001 517 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 ENPP2Q13822 863 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 SGO1Q5FBB7 561 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 TRIM65Q6PJ69 517 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 ZNF704Q6ZNC4 412 aaPredicted RBP2.43□□□□□ -2.02
SPG11-222ENST00000560435 LMNTD2Q8IXW0 634 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 QRFPRQ96P65 431 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 SLC32A1Q9H598 525 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 KLHL8Q9P2G9 620 aaPredicted RBP2.43□□□□□ -2.02
SPG11-222ENST00000560435 ASIC3Q9UHC3 531 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 PRO0461Q9UI25 63 aa2.43□□□□□ -2.02
SPG11-222ENST00000560435 A6NL46 340 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 CST5P28325 142 aaPredicted RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 AHRP35869 848 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 CCR10P46092 362 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 PEX6Q13608 980 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 KIAA1644Q3SXP7 199 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 ADAMTSL4-AS1Q5T5F5 129 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 METTL2BQ6P1Q9 378 aaKnown RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 ANO5Q75V66 913 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 SRLQ86TD4 932 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 FMNL3Q8IVF7 1028 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 ZNF614Q8N883 585 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 ABHD8Q96I13 439 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 METTL2AQ96IZ6 378 aaKnown RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 TNIP3Q96KP6 325 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 NEUROD6Q96NK8 337 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 AGAP3Q96P47 875 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 RMDN3Q96TC7 470 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 PKP2Q99959 881 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 HERPUD2Q9BSE4 406 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 TWSG1Q9GZX9 223 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 EPHX3Q9H6B9 360 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 PPP1R3EQ9H7J1 279 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 ATAD3AQ9NVI7 634 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 BEX4Q9NWD9 120 aaPredicted RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 FBXO9Q9UK97 447 aaPredicted RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 TTC7AQ9ULT0 858 aaPredicted RBP2.42□□□□□ -2.02
SPG11-222ENST00000560435 SUFUQ9UMX1 484 aa2.42□□□□□ -2.02
SPG11-222ENST00000560435 A0A1W2PPI3 338 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 PER2O15055 1255 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 EIF3DO15371 548 aaKnown RBP eCLIP2.41□□□□□ -2.02
SPG11-222ENST00000560435 BCAT2O15382 392 aaPredicted RBP2.41□□□□□ -2.02
SPG11-222ENST00000560435 NBPF7P0C2Y1 421 aaPredicted RBP2.41□□□□□ -2.02
SPG11-222ENST00000560435 PLA2G4BP0C869 781 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 CSF2RAP15509 400 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 AMPHP49418 695 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 GRIK3Q13003 919 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 KIR2DS3Q14952 304 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 SLC45A4Q5BKX6 768 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 FFAR4Q5NUL3 377 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 BRAT1Q6PJG6 821 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 FAM160B2Q86V87 743 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 SLC35F3Q8IY50 421 aa2.41□□□□□ -2.02
SPG11-222ENST00000560435 SPATA6LQ8N4H0 392 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms