RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 CREB5Q02930 508 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 GIT2Q14161 759 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 BTBD16Q32M84 506 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 HSDL1Q3SXM5 330 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 WDR60Q8WVS4 1066 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 EID2BQ96D98 161 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 GATA5Q9BWX5 397 aaPredicted RBP6.19□□□□□ -1.42
RTF1-204ENST00000558117 TM2D2Q9BX73 214 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 VPS16Q9H269 839 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 KCNK9Q9NPC2 374 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 TCP11L1Q9NUJ3 509 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 LRFN1Q9P244 771 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 PADI3Q9ULW8 664 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 B3GNT3Q9Y2A9 372 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 MYH15Q9Y2K3 1946 aa6.19□□□□□ -1.42
RTF1-204ENST00000558117 PDZD2O15018 2839 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 TSC2P49815 1807 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CLEC18AA5D8T8 446 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A18PA6NE21 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A16PA6NEW6 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 TRABD2BA6NFA1 517 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A9PA6NNJ1 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A5PA8MXJ8 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 SYT5O00445 386 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 INPPL1O15357 1258 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 RFPL2O75678 378 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CSTBP04080 98 aaKnown RBP6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A15PP0C7V4 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 FAM90A14PP0C7W9 464 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 ZNF84P51523 738 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 STAT2P52630 851 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CBFBQ13951 182 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 Q4G0T1 1027 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CCDC38Q502W7 563 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 ANKRD40Q6AI12 368 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 ZNF425Q6IV72 752 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 LIN54Q6MZP7 749 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CLEC18BQ6UXF7 455 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 KRBA2Q6ZNG9 492 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 TMC8Q8IU68 726 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 LAS2Q8IYD9 372 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CLEC18CQ8NCF0 446 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 MYRIPQ8NFW9 859 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 PIGOQ8TEQ8 1089 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 TRMT61AQ96FX7 289 aaKnown RBP6.18□□□□□ -1.42
RTF1-204ENST00000558117 CASD1Q96PB1 797 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 RMDN3Q96TC7 470 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 MAP3K20Q9NYL2 800 aaKnown RBP6.18□□□□□ -1.42
RTF1-204ENST00000558117 CCPG1Q9ULG6 757 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 UBE2J1Q9Y385 318 aaPredicted RBP6.18□□□□□ -1.42
RTF1-204ENST00000558117 SQORQ9Y6N5 450 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 CACNA1DQ01668 2161 aa6.18□□□□□ -1.42
RTF1-204ENST00000558117 ADGRG4Q8IZF6 3080 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 BOD1L1Q8NFC6 3051 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CELSR2Q9HCU4 2923 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 HIVEP1P15822 2718 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CELSR1Q9NYQ6 3014 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ICE1Q9Y2F5 2266 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ACKR2O00590 384 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 USP12O75317 370 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ICAM1P05362 532 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CNPP09543 421 aaKnown RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 CCDC192P0DO97 292 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 KRT10P13645 584 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 KLRC2P26717 231 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 EIF2S3P41091 472 aaKnown RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 POLGP54098 1239 aaPredicted RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 PNLIPRP1P54315 467 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 FAM3BP58499 235 aaPredicted RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 RPS13P62277 151 aaKnown RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 RPS6P62753 249 aaKnown RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 HSF1Q00613 529 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ID2Q02363 134 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ZNF91Q05481 1191 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 MAPRE1Q15691 268 aaKnown RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 PDXDC1Q6P996 788 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 MTSS1LQ765P7 747 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 FAM160B2Q86V87 743 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 TMEM173Q86WV6 379 aaPredicted RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 NANOGP1Q8N7R0 232 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 GMCL1P1Q8NEA9 526 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 SCARB1Q8WTV0 552 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CHURC1Q8WUH1 139 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 SDR42E1Q8WUS8 393 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 IGFBPL1Q8WX77 278 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 ZNF845Q96IR2 970 aaPredicted RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 GPR78Q96P69 363 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 FCRL5Q96RD9 977 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 KXD1Q9BQD3 176 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 TMEM117Q9H0C3 514 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CCDC134Q9H6E4 229 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 MLXIPQ9HAP2 919 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 DACT1Q9NYF0 836 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CLIP2Q9UDT6 1046 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 RAB21Q9UL25 225 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CDH7Q9ULB5 785 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 CNTN6Q9UQ52 1028 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 SIRT4Q9Y6E7 314 aaPredicted RBP6.17□□□□□ -1.42
RTF1-204ENST00000558117 FRMPD4Q14CM0 1322 aa6.17□□□□□ -1.42
RTF1-204ENST00000558117 NBEAL1Q6ZS30 2694 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms