RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 ZDHHC1Q8WTX9 485 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 CRELD1Q96HD1 420 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 OR2M4Q96R27 311 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 LYSMD1Q96S90 227 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 CMKLR1Q99788 373 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 MLPHQ9BV36 600 aaPredicted RBP9.33□□□□□ -0.92
YBX3-218ENST00000546298 CDH19Q9H159 772 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 SUDS3Q9H7L9 328 aaPredicted RBP9.33□□□□□ -0.92
YBX3-218ENST00000546298 NHEJ1Q9H9Q4 299 aaPredicted RBP9.33□□□□□ -0.92
YBX3-218ENST00000546298 PCDH9Q9HC56 1237 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 DDX56Q9NY93 547 aaKnown RBP9.33□□□□□ -0.92
YBX3-218ENST00000546298 DTLQ9NZJ0 730 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 TAAR2Q9P1P5 351 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 RABGEF1Q9UJ41 708 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 INTUQ9ULD6 942 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 SUFUQ9UMX1 484 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 PCDHGA7Q9Y5G6 932 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 RNF215Q9Y6U7 377 aa9.33□□□□□ -0.92
YBX3-218ENST00000546298 DOCK9Q9BZ29 2069 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 A0A1W2PNU3 283 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 CDRT15L2A8MXV6 281 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 AKR1B15C9JRZ8 316 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 PPP1R12AO14974 1030 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 ATXN7O15265 892 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 MFAP3LO75121 409 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 ASMTLO95671 621 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 PRLP01236 227 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 FGF1P05230 155 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 HLA-DQB2P05538 268 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 UGT1A5P35504 534 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 ADCY8P40145 1251 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 ACTR1BP42025 376 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 PDX1P52945 283 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 ACTR1AP61163 376 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 IFI35P80217 286 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 CTBSQ01459 385 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 RHDQ02161 417 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 ZFP36L1Q07352 338 aaKnown RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 NIPAL4Q0D2K0 466 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SLC10A2Q12908 348 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 COL9A2Q14055 689 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 SLC9A4Q6AI14 798 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 CCDC70Q6NSX1 233 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 DOK6Q6PKX4 331 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SLC30A9Q6PML9 568 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SPRED1Q7Z699 444 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 B3GNT8Q7Z7M8 397 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 PIM3Q86V86 326 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 C17orf82Q86X59 251 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 NRROSQ86YC3 692 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 CPNE8Q86YQ8 564 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 RFX6Q8HWS3 928 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 RHOT1Q8IXI2 618 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SCAMP4Q969E2 229 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SCARF2Q96GP6 870 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 PRR11Q96HE9 360 aaPredicted RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 SRPK1Q96SB4 655 aaKnown RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 CHP1Q99653 195 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 DPYSL5Q9BPU6 564 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 RIOK2Q9BVS4 552 aaKnown RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 FAM83DQ9H4H8 585 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 RAD18Q9NS91 495 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 SPATS2LQ9NUQ6 558 aaKnown RBP9.32□□□□□ -0.92
YBX3-218ENST00000546298 SPTLC3Q9NUV7 552 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 PKD2L2Q9NZM6 624 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 VPS18Q9P253 973 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 CD84Q9UIB8 345 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 TMEM98Q9Y2Y6 226 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 HEY1Q9Y5J3 304 aa9.32□□□□□ -0.92
YBX3-218ENST00000546298 C1orf232A0A0U1RR37 186 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 ANKRD66B4E2M5 251 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 KCNK1O00180 336 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 NVLO15381 856 aaKnown RBP9.31□□□□□ -0.92
YBX3-218ENST00000546298 SPOPO43791 374 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 CLDN7O95471 211 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 CPNE6O95741 557 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 FUCA1P04066 466 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 KRT1P04264 644 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 AK4P27144 223 aaPredicted RBP9.31□□□□□ -0.92
YBX3-218ENST00000546298 ALDH4A1P30038 563 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 CD86P42081 329 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 GPR3P46089 330 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 POLD2P49005 469 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 NR2C2P49116 596 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 MAZP56270 477 aaKnown RBP9.31□□□□□ -0.92
YBX3-218ENST00000546298 SKOR1P84550 965 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 B4GALNT1Q00973 533 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 VAC14Q08AM6 782 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 AP1B1Q10567 949 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 TFDP2Q14188 446 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 TCEAL1Q15170 157 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 PTPRRQ15256 657 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 SLC14A2Q15849 920 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 QPCTQ16769 361 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 AMZ1Q400G9 498 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 MAP9Q49MG5 647 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 PYCR3Q53H96 274 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 TMEM164Q5U3C3 297 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 ZNF438Q7Z4V0 828 aa9.31□□□□□ -0.92
YBX3-218ENST00000546298 NT5DC3Q86UY8 548 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms