RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PLD5Q8N7P1 536 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 TMIEQ8NEW7 156 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 OR2A12Q8NGT7 310 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 MIB2Q96AX9 1013 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CELF6Q96J87 481 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CCDC114Q96M63 670 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 FEM1AQ9BSK4 669 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 HDAC8Q9BY41 377 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 CLPBQ9H078 707 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 MUC3BQ9H195 1237 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 ETNK2Q9NVF9 386 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 PISDQ9UG56 409 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 NF1P21359 2839 aa12.55□□□□□ -0.4
CLSTN3-208ENST00000538933 TCRBV7S2A1N4TA0A589 114 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 C9orf172C9J069 976 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 CCDC188H7C350 402 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 KRT38O76015 456 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 PCDH8O95206 1070 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 MAP3K6O95382 1288 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 MT-CO1P00395 513 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 CHRNA3P32297 505 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 RABIFP47224 123 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 NDST2P52849 883 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 EIF3EP60228 445 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 PFN3P60673 137 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 ZFP36L1Q07352 338 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 C1orf61Q13536 156 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 SNX1Q13596 522 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 PDE1CQ14123 709 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 POLD3Q15054 466 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 PAFAH1B3Q15102 231 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 ERN2Q76MJ5 926 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 SETD3Q86TU7 594 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 ZC3H18Q86VM9 953 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 NLRP14Q86W24 1093 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 ATPAF2Q8N5M1 289 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 CCNYQ8ND76 341 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 ACTL9Q8TC94 416 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 NSMCE1Q8WV22 266 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 C1orf54Q8WWF1 131 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 GLMNQ92990 594 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 MAGOHBQ96A72 148 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 LENG8Q96PV6 779 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 FAM118BQ9BPY3 351 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 HERPUD2Q9BSE4 406 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 FRMD8P1Q9BZ68 369 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 STRADBQ9C0K7 418 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 SP110Q9HB58 689 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 SPASTQ9UBP0 616 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 HPCAL4Q9UM19 191 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 MFHAS1Q9Y4C4 1052 aa12.54□□□□□ -0.4
CLSTN3-208ENST00000538933 LRP4O75096 1905 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CHD5Q8TDI0 1954 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 KPNA3O00505 521 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 PHF2O75151 1096 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 SRCP12931 536 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 PECAM1P16284 738 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 YBEYP58557 167 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 GBE1Q04446 702 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 ADCY2Q08462 1091 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 C2orf54Q08AI8 447 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 AP1B1Q10567 949 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 KLF1Q13351 362 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 NOMO1Q15155 1222 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CCNG2Q16589 344 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 PARP15Q460N3 678 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 PRRT3Q5FWE3 981 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CCDC70Q6NSX1 233 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 DARS2Q6PI48 645 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 GSTA5Q7RTV2 222 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CDKL3Q8IVW4 592 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 KLHL7Q8IXQ5 586 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CHST14Q8NCH0 376 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 BTN2A2Q8WVV5 523 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 USP7Q93009 1102 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 TBATAQ96M53 351 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 GFM1Q96RP9 751 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 SPON2Q9BUD6 331 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 LRRC61Q9BV99 259 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 CARD6Q9BX69 1037 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 C1QTNF2Q9BXJ5 285 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 MAGEH1Q9H213 219 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 RRAGDQ9NQL2 400 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 SAE1Q9UBE0 346 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 VPS28Q9UK41 221 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 NEU3Q9UQ49 428 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 ZNF148Q9UQR1 794 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 HS3ST2Q9Y278 367 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 LOXL2Q9Y4K0 774 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 ADGRG4Q8IZF6 3080 aa12.53□□□□□ -0.4
CLSTN3-208ENST00000538933 ILVBLA1L0T0 632 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 RASA4BC9J798 803 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 RASA4O43374 803 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 BNIP3LO60238 219 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 ZNF189O75820 626 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 STK10O94804 968 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 CELA2BP08218 269 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 JMJD7P0C870 316 aa12.52□□□□□ -0.41
CLSTN3-208ENST00000538933 RBP3P10745 1247 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms