RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ERAP2Q6P179 960 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 SLC26A9Q7LBE3 791 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ARHGEF19Q8IW93 802 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 IQCKQ8N0W5 287 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 RBMXL3Q8N7X1 1067 aaKnown RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 CT55Q8WUE5 264 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 SLC35C1Q96A29 364 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 SNRNP40Q96DI7 357 aaKnown RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 RANBP9Q96S59 729 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 CPXM1Q96SM3 734 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 NCAPGQ9BPX3 1015 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ZYG11BQ9C0D3 744 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 TSPAN10Q9H1Z9 355 aaPredicted RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 ACTL8Q9H568 366 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ACSS2Q9NR19 701 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ASF1BQ9NVP2 202 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 TRNAU1APQ9NX07 287 aaKnown RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 KLHL3Q9UH77 587 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ATP8A1Q9Y2Q0 1164 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 ST14Q9Y5Y6 855 aa8.2□□□□□ -1.1
CD44-232ENST00000531118 MN1Q10571 1320 aaPredicted RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 ZNF469Q96JG9 3925 aaPredicted RBP8.2□□□□□ -1.1
CD44-232ENST00000531118 CACNA1CQ13936 2221 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 PCM1Q15154 2024 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 CETN3O15182 167 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 INSIG1O15503 277 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 CEACAM4O75871 244 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 RECQL5O94762 991 aaPredicted RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 RECKO95980 971 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 MYL1P05976 194 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 ANKRD34CP0C6C1 535 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 GM2AP17900 193 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 TRIM23P36406 574 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 GARSP41250 739 aaKnown RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 ACTR1BP42025 376 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 ITGA1P56199 1179 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 PER3P56645 1201 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 ACTR1AP61163 376 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 RHOAP61586 193 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 CTBSQ01459 385 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 GCNT1Q02742 428 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 DNM1Q05193 864 aaKnown RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 RAD51Q06609 339 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 CDK18Q07002 472 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 CUL4AQ13619 759 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 IL10RAQ13651 578 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 UGP2Q16851 508 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 WDR74Q6RFH5 385 aaPredicted RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 ZSWIM9Q86XI8 627 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 HPS6Q86YV9 775 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 NETO2Q8NC67 525 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 SLC37A2Q8TED4 501 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 EXOC2Q96KP1 924 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 RUFY1Q96T51 708 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 NPY6RQ99463 290 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 SLC38A3Q99624 504 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 FRMD8Q9BZ67 464 aaPredicted RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 TTYH3Q9C0H2 523 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 BRD8Q9H0E9 1235 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 WDCPQ9H6R7 721 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 RUBCNLQ9H714 662 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 METTL14Q9HCE5 456 aaKnown RBP8.19□□□□□ -1.1
CD44-232ENST00000531118 NDFIP2Q9NV92 336 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 ZDHHC3Q9NYG2 299 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 LNPEPQ9UIQ6 1025 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 SUFUQ9UMX1 484 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 NEU3Q9UQ49 428 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 MFHAS1Q9Y4C4 1052 aa8.19□□□□□ -1.1
CD44-232ENST00000531118 PIKFYVEQ9Y2I7 2098 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 MYO7BQ6PIF6 2116 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 TACC2O95359 2948 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 SERTM1A2A2V5 107 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 GOLGA6L3A6NEY3 463 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ZSCAN5CA6NGD5 496 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 C21orf140B9A014 251 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 TEX33O43247 280 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 THAP12O43422 761 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 MED7O43513 233 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ZG16O60844 167 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 SRGAP2O75044 1071 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 LETM1O95202 739 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 NDUFA10O95299 355 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ERBB2P04626 1255 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 CEACAM5P06731 702 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 ELFN1P0C7U0 828 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 KRT5P13647 590 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 HOXB4P17483 251 aaPredicted RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 ITGA3P26006 1051 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 GNA15P30679 374 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 PTGER4P35408 488 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 MAPK9P45984 424 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 MAPKAPK2P49137 400 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 FMO5P49326 533 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 CCL11P51671 97 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 RNASE9P60153 205 aaKnown RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 RPS18P62269 152 aaKnown RBP8.18□□□□□ -1.1
CD44-232ENST00000531118 DEUP1Q05D60 604 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 FOXM1Q08050 763 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 PEX6Q13608 980 aa8.18□□□□□ -1.1
CD44-232ENST00000531118 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms