RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 TLR1Q15399 786 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 FAM83EQ2M2I3 478 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 TXNDC8Q6A555 127 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 IL31Q6EBC2 164 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 KLC3Q6P597 504 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 BORAQ6PGQ7 559 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 EP400NLQ6ZTU2 488 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 GALNT7Q86SF2 657 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 SLC22A9Q8IVM8 553 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 CENPLQ8N0S6 344 aaPredicted RBP11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 C2CD4AQ8NCU7 369 aaPredicted RBP11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 BHLHE22Q8NFJ8 381 aaPredicted RBP11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 DUS3LQ96G46 650 aaKnown RBP11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 GPR78Q96P69 363 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 SEMA3CQ99985 751 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 TRMOQ9BU70 441 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 SPON2Q9BUD6 331 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 KLF16Q9BXK1 252 aaPredicted RBP11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 ATP13A1Q9HD20 1204 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 XPR1Q9UBH6 696 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 REV3LO60673 3130 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 MIA3Q5JRA6 1907 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 ANAPC1Q9H1A4 1944 aa11.02□□□□□ -0.65
SH3RF1-203ENST00000508685 CFLARO15519 480 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PHGDHO43175 533 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TGM5O43548 720 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 STAMBPO95630 424 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CRTAMO95727 393 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 FAM58BPP0C7Q3 252 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 MBL2P11226 248 aaPredicted RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 XRCC1P18887 633 aaPredicted RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PMLP29590 882 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SLC26A3P40879 764 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 EPHB3P54753 998 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CDH4P55283 916 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 MRPS22P82650 360 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 MPP1Q00013 466 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TNK2Q07912 1038 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 MTA1Q13330 715 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TRIM25Q14258 630 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PTK2BQ14289 1009 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TMEM259Q4ZIN3 620 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ADGRF1Q5T601 910 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 AGAP9Q5VTM2 703 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 FBXL19Q6PCT2 694 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 HACD2Q6Y1H2 254 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PNPLA1Q8N8W4 532 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 AGR3Q8TD06 166 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 BHMTQ93088 406 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 EXOC2Q96KP1 924 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CATSPER2Q96P56 530 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 EFHD1Q9BUP0 239 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 POLR1EQ9GZS1 481 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ARNT2Q9HBZ2 717 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 VPS45Q9NRW7 570 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TREX1Q9NSU2 369 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CXXC1Q9P0U4 656 aaPredicted RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SARDHQ9UL12 918 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 LZTS1Q9Y250 596 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 COPG1Q9Y678 874 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 AP4B1Q9Y6B7 739 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CHD5Q8TDI0 1954 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TCAF2A6NFQ2 919 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CCL22O00626 93 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 NRG2O14511 850 aaPredicted RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ACOT8O14734 319 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 LILRB3O75022 631 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 EFCAB14O75071 495 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 BAIAP3O94812 1187 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SAT1P21673 171 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PPM1AP35813 382 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SLC1A2P43004 574 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SERPINH1P50454 418 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ATP4BP51164 291 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SMAD3P84022 425 aaKnown RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SIRPB2Q5JXA9 342 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PPM1LQ5SGD2 360 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ZNF470Q6ECI4 717 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SPATA24Q86W54 205 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 SLC41A1Q8IVJ1 513 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 PELI3Q8N2H9 469 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 EFCAB3Q8N7B9 438 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 CCNYL1Q8N7R7 359 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ARL14EPQ8N8R7 260 aaPredicted RBP11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TADA1Q96BN2 335 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 NXNL1Q96CM4 212 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 NDNQ99608 321 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 HAUS8Q9BT25 410 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 ZBP1Q9H171 429 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 MAGEH1Q9H213 219 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 IL21Q9HBE4 155 aa11.01□□□□□ -0.65
SH3RF1-203ENST00000508685 TRANK1O15050 2925 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 A0A1B0GVM2 712 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 CBX4O00257 560 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 SDHDO14521 159 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 AURKAO14965 403 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 CLDN11O75508 207 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 F11P03951 625 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 C8BP07358 591 aa11□□□□□ -0.65
SH3RF1-203ENST00000508685 ATXN1LP0C7T5 689 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms