RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 GIPC2Q8TF65 315 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 ZFAND2BQ8WV99 257 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 TWIST2Q8WVJ9 160 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 LRTOMTQ8WZ04 291 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 TOP1MTQ969P6 601 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 CDKN2AIPNLQ96HQ2 116 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 LRCH3Q96II8 777 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 EXOC2Q96KP1 924 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 MGME1Q9BQP7 344 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 TUBB1Q9H4B7 451 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 POPDC3Q9HBV1 291 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 MRPL40Q9NQ50 206 aaKnown RBP9.84□□□□□ -0.83
CLIP1-204ENST00000501271 MARCH5Q9NX47 278 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 APPL1Q9UKG1 709 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 CROTQ9UKG9 612 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 MED16Q9Y2X0 877 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 AP4S1Q9Y587 144 aa9.84□□□□□ -0.83
CLIP1-204ENST00000501271 TCRBV3S1A0A5B6 114 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 UBA6A0AVT1 1052 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 C9JVG2 144 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 F5H5T6 163 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 AZIN1O14977 448 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 OR6B1O95007 311 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 NDST3O95803 873 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZDHHC11BP0C7U3 371 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZNF26P17031 533 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 FGFR3P22607 806 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZNF140P52738 457 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 STX1BP61266 288 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 BTG3Q14201 252 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 GEN1Q17RS7 908 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 KIF19Q2TAC6 998 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 KANK2Q63ZY3 851 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 HACD2Q6Y1H2 254 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 MFN1Q8IWA4 741 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 RHEBL1Q8TAI7 183 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 TRPC4APQ8TEL6 797 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 NCSTNQ92542 709 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 SLC45A3Q96JT2 553 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 FAM50BQ9Y247 325 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 A0A0J9YYE9 177 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 NR5A2O00482 541 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 CLASP2O75122 1294 aaKnown RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 FGF4P08620 206 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 GFAPP14136 432 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 HOXB8P17481 243 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ATF6P18850 670 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 CAPN3P20807 821 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 FMO4P31512 558 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 GNA12Q03113 381 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 SREBF2Q12772 1141 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 TRAP1Q12931 704 aaKnown RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 DUSP4Q13115 394 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 GPR17Q13304 367 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 LAMB3Q13751 1172 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 NRF1Q16656 503 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 SAMD4BQ5PRF9 694 aaKnown RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 RTP2Q5QGT7 225 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 PAQR3Q6TCH7 311 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 DDIASQ8IXT1 998 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 FAM110BQ8TC76 370 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 EME1Q96AY2 570 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 SPATA17Q96L03 361 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZNF599Q96NL3 588 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZBED2Q9BTP6 218 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 TFB2MQ9H5Q4 396 aaKnown RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 NLE1Q9NVX2 485 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 BTRCQ9Y297 605 aa9.83□□□□□ -0.84
CLIP1-204ENST00000501271 ZFP37Q9Y6Q3 630 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-204ENST00000501271 C7orf72A4D263 438 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 SUPT3HB4E1H0 165 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 KERAO60938 352 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 SUPT3HO75486 399 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 RHOBTB1O94844 696 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 TFAP2AP05549 437 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 ATP6V1B2P21281 511 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 EEF1DP29692 281 aaKnown RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 HSPA13P48723 471 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 CDKN1CP49918 316 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 RPS24P62847 133 aaKnown RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 YBX1P67809 324 aaKnown RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 C5orf22Q49AR2 442 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 MTX3Q5HYI7 312 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 HMBOX1Q6NT76 420 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 RAB44Q7Z6P3 723 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 HERC6Q8IVU3 1022 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 AHI1Q8N157 1196 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 METTL25Q8N6Q8 603 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 MDGA1Q8NFP4 955 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 OR4K2Q8NGD2 314 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 NAT14Q8WUY8 206 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 PRICKLE1Q96MT3 831 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 ASB2Q96Q27 587 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 SLC2A11Q9BYW1 496 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 COQ10BQ9H8M1 238 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 IL1RL2Q9HB29 575 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 INTS10Q9NVR2 710 aaKnown RBP9.82□□□□□ -0.84
CLIP1-204ENST00000501271 TMEM161AQ9NX61 479 aa9.82□□□□□ -0.84
CLIP1-204ENST00000501271 MAP10Q9P2G4 905 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms