RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZFR2Q9UPR6 939 aaKnown RBP8.04□□□□□ -1.12
USP40-216ENST00000485943 SHOC2Q9UQ13 582 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 JRKLQ9Y4A0 524 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 VPS13AQ96RL7 3174 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 TMEM131Q92545 1883 aa8.04□□□□□ -1.12
USP40-216ENST00000485943 A0A0J9YYE9 177 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 A0A1B0GTQ1 180 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TSPAN11A1L157 253 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ANKRD66B4E2M5 251 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ENC1O14682 589 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 AREL1O15033 823 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 HTRA2O43464 458 aaPredicted RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 SH3BP5O60239 455 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 GJB3O75712 270 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 CRTAMO95727 393 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 NDST3O95803 873 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 MT-CYBP00156 380 aaPredicted RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 TRBC1P01850 177 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 FGF1P05230 155 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZNF883P0CG24 379 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 CEACAM1P13688 526 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ITIH2P19823 946 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 HLA-DPA1P20036 260 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 STIP1P31948 543 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 CXCR5P32302 372 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 HNF1BP35680 557 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 WNT3AP56704 352 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 BASP1P80723 227 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 SEPT6Q14141 434 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TCEA2Q15560 299 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TRIP6Q15654 476 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 CNGA3Q16281 694 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZNF542PQ5EBM4 170 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 PRRT3Q5FWE3 981 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ANKRD20A2Q5SQ80 823 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 PRAMEF14Q5SWL7 426 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 MEI1Q5TIA1 1274 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ANKRD20A1Q5TYW2 823 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ANKRD20A3Q5VUR7 823 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZDHHC20Q5W0Z9 365 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ALS2CLQ60I27 953 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 AADACL2Q6P093 401 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 MACC1Q6ZN28 852 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZNF662Q6ZS27 426 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ERMP1Q7Z2K6 904 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TAF8Q7Z7C8 310 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 LINC00523Q86TU6 105 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 GATAD2AQ86YP4 633 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 SLC13A5Q86YT5 568 aaPredicted RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 PHACTR4Q8IZ21 702 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZNF567Q8N184 647 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TAB3Q8N5C8 712 aaPredicted RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 EID2Q8N6I1 236 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 FAM71DQ8N9W8 422 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 SPATA22Q8NHS9 363 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 CCDC110Q8TBZ0 833 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 GRK7Q8WTQ7 553 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.03□□□□□ -1.12
USP40-216ENST00000485943 ECHDC3Q96DC8 303 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 HES6Q96HZ4 224 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 CNDP2Q96KP4 475 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 SPATA13Q96N96 652 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 OLFM3Q96PB7 478 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 TMEM121Q9BTD3 319 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 APOOQ9BUR5 198 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 FICDQ9BVA6 458 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 ZCCHC2Q9C0B9 1178 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 GBA3Q9H227 469 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 STN1Q9H668 368 aaKnown RBP8.03□□□□□ -1.12
USP40-216ENST00000485943 RXFP3Q9NSD7 469 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 NCKIPSDQ9NZQ3 722 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 OR1A2Q9Y585 309 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 OTOGLQ3ZCN5 2332 aa8.03□□□□□ -1.12
USP40-216ENST00000485943 PIEZO1Q92508 2521 aa8.02□□□□□ -1.12
USP40-216ENST00000485943 A0A0U1RQJ8 604 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CTAGE9A4FU28 777 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 POM121BA6NF01 834 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 NPIPB15A6NHN6 443 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 PGRMC1O00264 195 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 TRAFD1O14545 582 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 CDX4O14627 284 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 STX7O15400 261 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 CLDN7O95471 211 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 PDHA1P08559 390 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 PIRTP0C851 137 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 RALBP11234 206 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 VCLP18206 1134 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CR2P20023 1033 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CSRP1P21291 193 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 PSMB4P28070 264 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 EPHA8P29322 1005 aaPredicted RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 IGFALSP35858 605 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 FDFT1P37268 417 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ETV3P41162 512 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 CTSKP43235 329 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 PEX5P50542 639 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 SRP54P61011 504 aaKnown RBP8.02□□□□□ -1.13
USP40-216ENST00000485943 NIPAL4Q0D2K0 466 aa8.02□□□□□ -1.13
USP40-216ENST00000485943 ILF3Q12906 894 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP40-216ENST00000485943 LAMB3Q13751 1172 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms