RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 LGR4Q9BXB1 951 aa13.1□□□□□ -0.31
TPM3-216ENST00000473036 ERVMER34-1Q9H9K5 563 aa13.1□□□□□ -0.31
TPM3-216ENST00000473036 GDF3Q9NR23 364 aa13.1□□□□□ -0.31
TPM3-216ENST00000473036 DKK4Q9UBT3 224 aa13.1□□□□□ -0.31
TPM3-216ENST00000473036 SHOC2Q9UQ13 582 aa13.1□□□□□ -0.31
TPM3-216ENST00000473036 APOBEC2Q9Y235 224 aaKnown RBP13.1□□□□□ -0.31
TPM3-216ENST00000473036 PSMD11O00231 422 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 SH3BP5O60239 455 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 SDC3O75056 442 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 CBFA2T3O75081 653 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 CER1O95813 267 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 FUCA1P04066 466 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 ZSCAN5DPP0CG00 497 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 ZNF883P0CG24 379 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 GIMD1P0DJR0 217 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 TRIM23P36406 574 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 RABIFP47224 123 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 MPP3Q13368 585 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 PDE1CQ14123 709 aaPredicted RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 SPARCL1Q14515 664 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 TRIP6Q15654 476 aaKnown RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 SLC1A5Q15758 541 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 ESRP1Q6NXG1 681 aaKnown RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 PNCKQ6P2M8 343 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 TTC27Q6P3X3 843 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 RANBP10Q6VN20 620 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 CCNI2Q6ZMN8 369 aaPredicted RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 MICALCLQ6ZW33 695 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 SLC25A45Q8N413 288 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 CHCHD4Q8N4Q1 142 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 TAB3Q8N5C8 712 aaPredicted RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 PTCD2Q8WV60 388 aaKnown RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 NUS1Q96E22 293 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 OSBPL9Q96SU4 736 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 CCDC86Q9H6F5 360 aaKnown RBP13.09□□□□□ -0.31
TPM3-216ENST00000473036 HOMER3Q9NSC5 361 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 HAUS2Q9NVX0 235 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 UCKL1Q9NWZ5 548 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 SNX12Q9UMY4 172 aa13.09□□□□□ -0.31
TPM3-216ENST00000473036 SETXQ7Z333 2677 aaKnown RBP13.08□□□□□ -0.31
TPM3-216ENST00000473036 GOLGA4Q13439 2230 aaKnown RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 C1orf232A0A0U1RR37 186 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 TMEM202A6NGA9 273 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 USP12O75317 370 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 EPOP01588 193 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 ITGAVP06756 1048 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 EPHA8P29322 1005 aaPredicted RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 CA5AP35218 305 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 PAFAH1B1P43034 410 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 SPINT3P49223 89 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 ARHGEF7Q14155 803 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 PTPRCAPQ14761 206 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 CCNG2Q16589 344 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 LONRF2Q1L5Z9 754 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 DRICH1Q6PGQ1 229 aaPredicted RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 TMC3Q7Z5M5 1100 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 PDZD3Q86UT5 571 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 TTC30BQ8N4P2 665 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 BAHD1Q8TBE0 780 aaPredicted RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 IFT43Q96FT9 208 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 FICDQ9BVA6 458 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 ADGRE3Q9BY15 652 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 FRMD8P1Q9BZ68 369 aaPredicted RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 MAGEE1Q9HCI5 957 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 CNOT6Q9ULM6 557 aaKnown RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 TTC7AQ9ULT0 858 aaPredicted RBP13.08□□□□□ -0.32
TPM3-216ENST00000473036 ZNF711Q9Y462 761 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 PCDHGB2Q9Y5G2 931 aa13.08□□□□□ -0.32
TPM3-216ENST00000473036 FADS2P1A8MWK0 482 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 PCDHGA12O60330 932 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 CSF2P04141 144 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 CELA2BP08218 269 aaPredicted RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 ZNF30P17039 623 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 CA4P22748 312 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 YPEL5P62699 121 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 TUBB4BP68371 445 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 DPTQ07507 201 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 MTM1Q13496 603 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 PARP6Q2NL67 630 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 P3H1Q32P28 736 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 SOWAHCQ53LP3 525 aaPredicted RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 ITPRIPL1Q6GPH6 555 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 NAXDQ8IW45 347 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 RBFAQ8N0V3 343 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 GPR26Q8NDV2 337 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 FAM174AQ8TBP5 190 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 ZNF592Q92610 1267 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 TSACCQ96A04 125 aaPredicted RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 SKA1Q96BD8 255 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 RIOK2Q9BVS4 552 aaKnown RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 C1QTNF7Q9BXJ2 289 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 AP1M1Q9BXS5 423 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 TEX101Q9BY14 249 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 ZFYVE1Q9HBF4 777 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 MRPL40Q9NQ50 206 aaKnown RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 PCOLCE2Q9UKZ9 415 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 TMPRSS11EQ9UL52 423 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 ZNF148Q9UQR1 794 aa13.07□□□□□ -0.32
TPM3-216ENST00000473036 DRG1Q9Y295 367 aaKnown RBP13.07□□□□□ -0.32
TPM3-216ENST00000473036 PCYT1BQ9Y5K3 369 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms