RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 C1QTNF1Q9BXJ1 281 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 SIRPGQ9P1W8 387 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 PCDHGB3Q9Y5G1 929 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 COL1A2P08123 1366 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 C1RP00736 705 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 ITGAVP06756 1048 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 DBTP11182 482 aaKnown RBP13.22□□□□□ -0.29
COL1A1-201ENST00000225964 C10orf107Q8IVU9 208 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 ZBTB2Q8N680 514 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 KBTBD7Q8WVZ9 684 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 TSEN15Q8WW01 171 aaKnown RBP13.22□□□□□ -0.29
COL1A1-201ENST00000225964 DPEP2Q9H4A9 486 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 SMIM35A0A1B0GVV1 85 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 SUV39H1O43463 412 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 TNFRSF21O75509 655 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 ELP6Q0PNE2 266 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 RIPOR3Q96MK2 946 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 KCNMB3Q9NPA1 279 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 ZFP37Q9Y6Q3 630 aaPredicted RBP13.22□□□□□ -0.29
COL1A1-201ENST00000225964 TRBC1P01850 177 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 PSME3P61289 254 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 ZNF846Q147U1 533 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 PTGES3Q15185 160 aaKnown RBP13.22□□□□□ -0.29
COL1A1-201ENST00000225964 CPTPQ5TA50 214 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 PRR23BQ6ZRT6 265 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 CFAP206Q8IYR0 622 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 FBXO15Q8NCQ5 510 aaPredicted RBP13.22□□□□□ -0.29
COL1A1-201ENST00000225964 OR5B17Q8NGF7 314 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 PIH1D2Q8WWB5 315 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 TIFAQ96CG3 184 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 SAR1AQ9NR31 198 aa13.22□□□□□ -0.29
COL1A1-201ENST00000225964 AZIN1O14977 448 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 C22orf31O95567 290 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 ATP6V0D1P61421 351 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 LINGO4Q6UY18 593 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 RTL4Q6ZR62 310 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 TNS4Q8IZW8 715 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 NDRG1Q92597 394 aaKnown RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SLC38A3Q99624 504 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 AGO3Q9H9G7 860 aaKnown RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SYNPO2Q9UMS6 1093 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 PREX1Q8TCU6 1659 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 TAF4O00268 1085 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 PSIP1O75475 530 aaKnown RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SHBGP04278 402 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 GLIS3Q8NEA6 775 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 ZCCHC10Q8TBK6 192 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 ZNF398Q8TD17 642 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SNX15Q9NRS6 342 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 MBD2Q9UBB5 411 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 IKZF2Q9UKS7 526 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 H3BQF6 201 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 CBX5P45973 191 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 DMPKQ09013 629 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 GRSF1Q12849 480 aaKnown RBP eCLIP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 TEFMQ96QE5 360 aaKnown RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 GAL3ST4Q96RP7 486 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 KCTD5Q9NXV2 234 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 CLEC4AQ9UMR7 237 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 COL5A2P05997 1499 aaPredicted RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 ITGA2BP08514 1039 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 PPIDQ08752 370 aaKnown RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 BROXQ5VW32 411 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 MSANTD2Q6P1R3 559 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SLC43A3Q8NBI5 491 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 TSPAN18Q96SJ8 248 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 CHMP1AQ9HD42 196 aaPredicted RBP13.21□□□□□ -0.29
COL1A1-201ENST00000225964 CKLFQ9UBR5 152 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 SSR3Q9UNL2 185 aa13.21□□□□□ -0.29
COL1A1-201ENST00000225964 CLDN11O75508 207 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 PSMG1O95456 288 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 SAGP10523 405 aaPredicted RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 MAT2AP31153 395 aaKnown RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 CCT3P49368 545 aaKnown RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 STARP49675 285 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 TP53INP1Q96A56 240 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 RNF31Q96EP0 1072 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 BTN2A3PQ96KV6 586 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 RPP40O75818 363 aaKnown RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 SPAM1P38567 509 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 GPD2P43304 727 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 TUSC3Q13454 348 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 MED22Q15528 200 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 RFWD3Q6PCD5 774 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 BEND5Q7L4P6 421 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 SNX20Q7Z614 316 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 OR7A2PQ8NGA2 310 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 IL31RAQ8NI17 732 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 LNX1Q8TBB1 728 aaPredicted RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 PIWIL2Q8TC59 973 aaKnown RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 PTCD3Q96EY7 689 aaKnown RBP13.21□□□□□ -0.3
COL1A1-201ENST00000225964 MCCC2Q9HCC0 563 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 DERAQ9Y315 318 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 RAI2Q9Y5P3 530 aa13.21□□□□□ -0.3
COL1A1-201ENST00000225964 FKBP1BP68106 108 aa13.2□□□□□ -0.3
COL1A1-201ENST00000225964 SMARCB1Q12824 385 aa13.2□□□□□ -0.3
COL1A1-201ENST00000225964 HERVK_113Q902F9 699 aa13.2□□□□□ -0.3
COL1A1-201ENST00000225964 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.2□□□□□ -0.3
COL1A1-201ENST00000225964 XPR1Q9UBH6 696 aa13.2□□□□□ -0.3
COL1A1-201ENST00000225964 CNOT6Q9ULM6 557 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms