RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 FTCDO95954 541 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 PSMA4P25789 261 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 NFKBIAP25963 317 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 F2RL1P55085 397 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 CEBPZQ03701 1054 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 CTF1Q16619 201 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 SETMARQ53H47 684 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 CXorf66Q5JRM2 361 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 SIGIRRQ6IA17 410 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 FAM180BQ6P0A1 224 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 CYP20A1Q6UW02 462 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 KRBA2Q6ZNG9 492 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 PQLC2Q6ZP29 291 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 FOXRED2Q8IWF2 684 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 FRMD1Q8N878 549 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 LILRB1Q8NHL6 650 aaPredicted RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 DIAPH3Q9NSV4 1193 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 CNOT8Q9UFF9 292 aaKnown RBP4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 TINAGQ9UJW2 476 aa4.57□□□□□ -1.68
SMCHD1-204ENST00000581226 A0A087X0M5 115 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 A0A1B0GX30 115 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 VCYO14598 125 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 SH3BP5O60239 455 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 CHMP24386 653 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 CSTF3Q12996 717 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 MED22Q15528 200 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 OASLQ15646 514 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 KRT24Q2M2I5 525 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 C9orf57Q5W0N0 161 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 KCTD18Q6PI47 426 aaPredicted RBP4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 PDILTQ8N807 584 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 PPHLN1Q8NEY8 458 aaKnown RBP4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 WFIKKN2Q8TEU8 576 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 TANKQ92844 425 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 HARBI1Q96MB7 349 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 WDFY2Q96P53 400 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 DUX5Q96PT3 197 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 PCGF1Q9BSM1 259 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 C1QTNF4Q9BXJ3 329 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 GAREM1Q9H706 876 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 POLR1BQ9H9Y6 1135 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 SLC28A3Q9HAS3 691 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 MMP25Q9NPA2 562 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 SMARCAL1Q9NZC9 954 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 EHD2Q9NZN4 543 aa4.56□□□□□ -1.68
SMCHD1-204ENST00000581226 CKAP5Q14008 2032 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 A0A1W2PQF6 199 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 PLSCR5A0PG75 271 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 HNRNPCL1O60812 293 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 TIPRLO75663 272 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 RNASEH2AO75792 299 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 IPO7O95373 1038 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 PMS2P2O95744 297 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 MLYCDO95822 493 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 AFPP02771 609 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 EIF2S1P05198 315 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 HOXB6P17509 224 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 RRM1P23921 792 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 BDKRB2P30411 391 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 KRTAP10-9P60411 292 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 SEC61BP60468 96 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 ZNF155Q12901 538 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 SNTA1Q13424 505 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 CCDC30Q5VVM6 783 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 RGMBQ6NW40 437 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 TTI2Q6NXR4 508 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 CCNI2Q6ZMN8 369 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.55□□□□□ -1.683e-7■■■■■ 64.7
SMCHD1-204ENST00000581226 PXKQ7Z7A4 578 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 ADSSL1Q8N142 457 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 SMRP1Q8NCR6 262 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 OR14L1PQ8NHC6 308 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 ARHGEF2Q92974 986 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 IGSF8Q969P0 613 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 SKA1Q96BD8 255 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 BICD1Q96G01 975 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 ZNF385AQ96PM9 386 aaKnown RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 CTAGE1Q96RT6 745 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 RANGRFQ9HD47 186 aaPredicted RBP4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 KRT84Q9NSB2 600 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 WWOXQ9NZC7 414 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 SIX4Q9UIU6 781 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 ADAM18Q9Y3Q7 739 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 MAU2Q9Y6X3 613 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 RUSC2Q8N2Y8 1516 aa4.55□□□□□ -1.68
SMCHD1-204ENST00000581226 DENND3A2RUS2 1198 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 MAGEA13PA6NCF6 341 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 KRTAP29-1A8MX34 341 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 MID1O15344 667 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 USO1O60763 962 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 RFPL2O75678 378 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 SLC25A12O75746 678 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 ARL3P36405 182 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 CLCNKAP51800 687 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 HNRNPH2P55795 449 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 RRP1P56182 461 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 SETQ01105 290 aaPredicted RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 EEF1A2Q05639 463 aaKnown RBP4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 COASYQ13057 564 aa4.54□□□□□ -1.68
SMCHD1-204ENST00000581226 TNFAIP1Q13829 316 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms