RNA–Protein interactions for RNA: ENST00000563485.2

HMGB1P33-201, Transcript of high mobility group box 1 pseudogene 33, humanhuman

BASIC

Gene HMGB1P33, Length 527 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P33-201ENST00000563485 CD53P19397 219 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 CORO1AP31146 461 aaKnown RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 PSMC2P35998 433 aaKnown RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 METAP2P50579 478 aaKnown RBP eCLIP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 BIRC2Q13490 618 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 HIST2H2ACQ16777 129 aaPredicted RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 GPATCH4Q5T3I0 446 aaKnown RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 KCTD18Q6PI47 426 aaPredicted RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 LRRC8DQ7L1W4 858 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 SPATA6LQ8N4H0 392 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 ZSCAN31Q96LW9 406 aaPredicted RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 ZNF583Q96ND8 569 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 PCYT2Q99447 389 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 GLIS2Q9BZE0 524 aaPredicted RBP3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 NDST4Q9H3R1 872 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 ZNF696Q9H7X3 374 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 MMP25Q9NPA2 562 aa3.23□□□□□ -1.89
HMGB1P33-201ENST00000563485 GOLGA6L9A6NEM1 432 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 GAGE10A6NGK3 116 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 GUCY1B2O75343 617 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 LDLRP01130 860 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 BDKRB2P30411 391 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 GNL1P36915 607 aaPredicted RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 HALP42357 657 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 RAD23BP54727 409 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 ISL1P61371 349 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 SORDQ00796 357 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 PPFIA1Q13136 1202 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 CCDC6Q16204 474 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 KRT24Q2M2I5 525 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 C14orf177Q52M58 125 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 QSOX2Q6ZRP7 698 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 RNF113BQ8IZP6 322 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 METTL27Q8N6F8 245 aaPredicted RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 WDSUB1Q8N9V3 476 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 NOC3LQ8WTT2 800 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 PABPC5Q96DU9 382 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 MPHOSPH8Q99549 860 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 MTERF1Q99551 399 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 PLEKHA4Q9H4M7 779 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 HINT3Q9NQE9 182 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 TMEM160Q9NX00 188 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 DDX43Q9NXZ2 648 aaKnown RBP3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 HCN3Q9P1Z3 774 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 OR2W1Q9Y3N9 320 aa3.22□□□□□ -1.89
HMGB1P33-201ENST00000563485 TEX13CA0A0J9YWL9 993 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 LILRA5A6NI73 299 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 EIF3FO00303 357 aaPredicted RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 FTCDO95954 541 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 DDX5P17844 614 aaKnown RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 RRM1P23921 792 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 GGT5P36269 586 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 UFM1P61960 85 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 PDE1BQ01064 536 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 SREBF2Q12772 1141 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 NAE1Q13564 534 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 CCDC96Q2M329 555 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 TRNP1Q6NT89 227 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 METTL2BQ6P1Q9 378 aaKnown RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 ZNF852Q6ZMS4 543 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 ASB18Q6ZVZ8 466 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 KCTD8Q6ZWB6 473 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 LRRTM4Q86VH4 590 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 GRAPLQ8TC17 118 aaPredicted RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 TRIM63Q969Q1 353 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 ZBTB10Q96DT7 871 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 METTL2AQ96IZ6 378 aaKnown RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 KLHL15Q96M94 604 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 SYT17Q9BSW7 474 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 C1QTNF5Q9BXJ0 243 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 GPR63Q9BZJ6 419 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 SLC25A10Q9UBX3 287 aaPredicted RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 TTC7AQ9ULT0 858 aaPredicted RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 FAF1Q9UNN5 650 aaPredicted RBP3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 LOXL2Q9Y4K0 774 aa3.21□□□□□ -1.9
HMGB1P33-201ENST00000563485 SNED1Q8TER0 1413 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 DVL1O14640 695 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 LDLRAD4O15165 306 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 SEC14L5O43304 696 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 PRSS1P07477 247 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 IRF1P10914 325 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 DVL1P1P54792 670 aaPredicted RBP3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 GGNBP1Q5YKI7 109 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 PLEKHA7Q6IQ23 1121 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 ZNF280DQ6N043 979 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 DUS1LQ6P1R4 473 aaKnown RBP3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 RRM2BQ7LG56 351 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 HAPLN4Q86UW8 402 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 PCDH20Q8N6Y1 951 aaKnown RBP3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 CTCFLQ8NI51 663 aaPredicted RBP3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 HMGCLL1Q8TB92 370 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 TAF15Q92804 592 aaKnown RBP eCLIP3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 SLC41A2Q96JW4 573 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 SH3GL2Q99962 352 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 FAM110AQ9BQ89 295 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 HERPUD2Q9BSE4 406 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 FUZQ9BT04 418 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 LRRC1Q9BTT6 524 aa3.2□□□□□ -1.9
HMGB1P33-201ENST00000563485 GFRA4Q9GZZ7 299 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms