RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF252P-AS1	Q0IIN9	211 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZSWIM7	Q19AV6	140 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MARC1	Q5VT66	337 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TYW3	Q6IPR3	259 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	FAM131A	Q6UXB0	335 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF621	Q6ZSS3	439 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CDH24	Q86UP0	819 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	VSIG10L	Q86VR7	867 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MARVELD2	Q8N4S9	558 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	AGBL3	Q8NEM8	1001 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYDGF	Q969H8	173 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	FBXO32	Q969P5	355 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LINGO1	Q96FE5	620 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PLEKHA8	Q96JA3	519 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ASB2	Q96Q27	587 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CNPPD1	Q9BV87	410 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PRKD2	Q9BZL6	878 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HIPK3	Q9H422	1215 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZBTB26	Q9HCK0	441 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	KRT84	Q9NSB2	600 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	KL	Q9UEF7	1012 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MAGEL2	Q9UJ55	1249 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MOSPD1	Q9UJG1	213 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	BAZ2B	Q9UIF8	2168 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	hCG_2039718	K7EN88	272 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HTRA2	O43464	458 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	DENR	O43583	198 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RECQL4	O94761	1208 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC25A27	O95847	323 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	C9	P02748	559 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TSPAN19	P0C672	248 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYCLP1	P12525	358 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	IFI30	P13284	250 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LMO2	P25791	158 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PCSK1	P29120	753 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ADCYAP1R1	P41586	468 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HARS2	P49590	506 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC16A1	P53985	500 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SMARCB1	Q12824	385 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SIM2	Q14190	667 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYBPC3	Q14896	1274 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TIGD2	Q4W5G0	525 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	STXBP5	Q5T5C0	1151 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RAP1GAP2	Q684P5	730 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CATSPERG	Q6ZRH7	1159 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PRR23B	Q6ZRT6	265 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	DDX53	Q86TM3	631 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CAND1	Q86VP6	1230 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	UBE2J2	Q8N2K1	259 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PQLC3	Q8N755	202 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	C1orf127	Q8N9H9	656 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TRIM63	Q969Q1	353 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ROPN1L	Q96C74	230 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PRICKLE1	Q96MT3	831 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	P2RX7	Q99572	595 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TUBA8	Q9NY65	449 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SUCO	Q9UBS9	1254 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GIMAP2	Q9UG22	337 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	OAZ3	Q9UMX2	235 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PTGDR2	Q9Y5Y4	395 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LRP5	O75197	1615 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ITGB4	P16144	1822 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GNG14	A0A1W2PPG7	69 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LOC110117498-PIK3R3	F6TDL0	507 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	UBXN8	O00124	270 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	WNT10B	O00744	389 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYL12B	O14950	172 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SNN	O75324	88 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RECQL5	O94762	991 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	MYC	P01106	439 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SLC7A1	P30825	629 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	OR1E1	P30953	314 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	WNT7B	P56706	349 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	HERC3	Q15034	1050 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CRY1	Q16526	586 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	FGD3	Q5JSP0	725 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TJAP1	Q5JTD0	557 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	SPANXN2	Q5MJ10	180 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RNF219	Q5W0B1	726 aa	Predicted RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	DENND5A	Q6IQ26	1287 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ESRP1	Q6NXG1	681 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	XKR5	Q6UX68	686 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	EIF3M	Q7L2H7	374 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIM3	Q86V86	326 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	TBC1D21	Q8IYX1	336 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LGI2	Q8N0V4	545 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	LIX1	Q8N485	282 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	CPSF7	Q8N684	471 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PIK3C3	Q8NEB9	887 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	PROX1	Q92786	737 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	GATA6	Q92908	595 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	KCNA7	Q96RP8	456 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RBM4B	Q9BQ04	359 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	FEM1A	Q9BSK4	669 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RBM4	Q9BWF3	364 aa	Known RBP	4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	RHOJ	Q9H4E5	214 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ZNF696	Q9H7X3	374 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ARHGEF4	Q9NR80	690 aa		4.98	□□□□□ -1.61
SYNE2-223	ENST00000557005	ADPRHL2	Q9NX46	363 aa		4.98	□□□□□ -1.61

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