RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TRAPPC9Q96Q05 1148 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PANX3Q96QZ0 392 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 FCRL5Q96RD9 977 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 TSPAN18Q96SJ8 248 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 MIPEPQ99797 713 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 BDH2Q9BUT1 245 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 OXSMQ9NWU1 459 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 CCDC162PA2VCL2 907 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 MYADML2A6NDP7 307 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 M0R3G1 203 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 DEAF1O75398 565 aaPredicted RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 RPP40O75818 363 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 COL6A2P12110 1019 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 CKBP12277 381 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 XRCC1P18887 633 aaPredicted RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 IL5RAQ01344 420 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PRKG2Q13237 762 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 ZNF280BQ86YH2 543 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 TWIST2Q8WVJ9 160 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 RERGLQ9H628 205 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 GIMAP2Q9UG22 337 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 FKBPLQ9UIM3 349 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 SCN9AQ15858 1988 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 A0A0U1RQF3 1178 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 HS6ST1O60243 411 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 IGSF6O95976 241 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PKMP14618 531 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 UQCRBP14927 111 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 AP5B1Q2VPB7 878 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 CPNE9Q8IYJ1 553 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 CD99L2Q8TCZ2 262 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 EXOSC4Q9NPD3 245 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 NDUFA13Q9P0J0 144 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 GNEQ9Y223 722 aaKnown RBP15.67■□□□□ 0.1
CUX1-211ENST00000546411 INVSQ9Y283 1065 aa15.67■□□□□ 0.1
CUX1-211ENST00000546411 PAPPAQ13219 1627 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 DHRS12A0PJE2 317 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 OR6C75A6NL08 312 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 ULK1O75385 1050 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 FGF3P11487 239 aaPredicted RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 HOXB8P17481 243 aaPredicted RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 GCAP28676 217 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 SCNN1AP37088 669 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 CCT8P50990 548 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 MLLT6P55198 1093 aaPredicted RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 TNKS2Q9H2K2 1166 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 PNPLA8Q9NP80 782 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 SCN7AQ01118 1682 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 GABRR2P28476 465 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 SERPINA4P29622 427 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 LRRC73Q5JTD7 316 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 ATXN7L2Q5T6C5 722 aaPredicted RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 FBXO27Q8NI29 283 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 ASB2Q96Q27 587 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 COMMD8Q9NX08 183 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 ANAPC2Q9UJX6 822 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 U3KQV3 271 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 SOCS7O14512 581 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 ADCY6O43306 1168 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 TYMPP19971 482 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 CLK1P49759 484 aaKnown RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 MAPKAPK3Q16644 382 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 TRMT11Q7Z4G4 463 aaKnown RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 NAT16Q8N8M0 369 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 FAM47BQ8NA70 645 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 TPD52L3Q96J77 140 aa15.66■□□□□ 0.1
CUX1-211ENST00000546411 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.66■□□□□ 0.18e-7■■■□□ 18
CUX1-211ENST00000546411 FCF1Q9Y324 198 aaKnown RBP15.66■□□□□ 0.1
CUX1-211ENST00000546411 H3BMM5 538 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 PIP5K1BO14986 540 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 GALNT2Q10471 571 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 IKBKEQ14164 716 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 RBM44Q6ZP01 1051 aaKnown RBP15.65■□□□□ 0.1
CUX1-211ENST00000546411 VPS33AQ96AX1 596 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 TMEM159Q96B96 161 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 SKA1Q96BD8 255 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 OSGEPL1Q9H4B0 414 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 C6orf203Q9P0P8 240 aaPredicted RBP15.65■□□□□ 0.1
CUX1-211ENST00000546411 DNAJA2O60884 412 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 S100A3P33764 101 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 ALFQ53S48 1182 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 PAQR3Q6TCH7 311 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 RRM2BQ7LG56 351 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 HOMEZQ8IX15 550 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 TSPAN14Q8NG11 270 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 KLF11O14901 512 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 CNPP09543 421 aaKnown RBP15.65■□□□□ 0.1
CUX1-211ENST00000546411 CDH2P19022 906 aaPredicted RBP15.65■□□□□ 0.1
CUX1-211ENST00000546411 PARP15Q460N3 678 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 SPESP1Q6UW49 350 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 ZDHHC13Q8IUH4 622 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 SPPL2AQ8TCT8 520 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 HAPLN3Q96S86 360 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 DGCR6LQ9BY27 220 aa15.65■□□□□ 0.1
CUX1-211ENST00000546411 FBRSL1Q9HCM7 1045 aaKnown RBP15.65■□□□□ 0.1
CUX1-211ENST00000546411 ACSL4O60488 711 aa15.64■□□□□ 0.09
CUX1-211ENST00000546411 MSH3P20585 1137 aa15.64■□□□□ 0.09
CUX1-211ENST00000546411 ITGAXP20702 1163 aa15.64■□□□□ 0.09
CUX1-211ENST00000546411 YBEYP58557 167 aaPredicted RBP15.64■□□□□ 0.09
CUX1-211ENST00000546411 KIAA0930Q6ICG6 404 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms