RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 POU6F1Q14863 301 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 LRIT3Q3SXY7 679 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PRPF38BQ5VTL8 546 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 RHBDF2Q6PJF5 856 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ARHGAP12Q8IWW6 846 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 BBS5Q8N3I7 341 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PPM1NQ8N819 430 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 OR52K1Q8NGK4 314 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CSGALNACT1Q8TDX6 532 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 IFT43Q96FT9 208 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ATXN7L3BQ96GX2 97 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CEP295NLQ96MC4 621 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CDCA3Q99618 268 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 TRMT61BQ9BVS5 477 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 MARCH7Q9H992 704 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 EVLQ9UI08 416 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 A0A1B0GTW7 788 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 SMAD6O43541 496 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 EDF1O60869 148 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 FGF19O95750 216 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 EEF1B2P24534 225 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 STIP1P31948 543 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 RECQLP46063 649 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 NR2C2P49116 596 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 DGKGP49619 791 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC7A9P82251 487 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ITGADQ13349 1161 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 BMPR2Q13873 1038 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PRPSAP1Q14558 356 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PTPRRQ15256 657 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 FNDC3BQ53EP0 1204 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PRSS36Q5K4E3 855 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 TRMT10CQ7L0Y3 403 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PSTKQ8IV42 348 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 KIAA2013Q8IYS2 634 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ULK2Q8IYT8 1036 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 BLOC1S5Q8TDH9 187 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 INPP5DQ92835 1189 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GATA6Q92908 595 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 ZDHHC6Q9H6R6 413 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 COPS7BQ9H9Q2 264 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PAK5Q9P286 719 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 DEC1Q9P2X7 70 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GRID1Q9ULK0 1009 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDHGB4Q9UN71 923 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDHGB5Q9Y5G0 923 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 C1orf232A0A0U1RR37 186 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 LAMP2P13473 410 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HOXB8P17481 243 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CTPS1P17812 591 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 POLR2EP19388 210 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HLA-FP30511 346 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PHBP35232 272 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 NNMTP40261 264 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 OCRLQ01968 901 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 SEMA3BQ13214 749 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 GEN1Q17RS7 908 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 C12orf40Q86WS4 652 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HPS6Q86YV9 775 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PNPLA1Q8N8W4 532 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 LEMD2Q8NC56 503 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 CHFRQ96EP1 664 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 QKIQ96PU8 341 aaKnown RBP eCLIP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 NOL6Q9H6R4 1146 aaKnown RBP8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 HEBP1Q9NRV9 189 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PCYOX1Q9UHG3 505 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC7A8Q9UHI5 535 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 PLA2G4CQ9UP65 541 aa8.7□□□□□ -1.02
LIMCH1-209ENST00000509277 A0A0A0MRY4 1105 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ARHGAP10A1A4S6 786 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TULP3O75386 442 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 GMNNO75496 209 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TMEM63AO94886 807 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ITGAVP06756 1048 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 INHBAP08476 426 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 HOXD9P28356 352 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 HOXA9P31269 272 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ST8SIA6P61647 398 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PAFAH1B3Q15102 231 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 HIF1AQ16665 826 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 VITQ6UXI7 678 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 Q6ZVU0 165 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 BEND5Q7L4P6 421 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 GPR65Q8IYL9 337 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 CHPFQ8IZ52 775 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 DEFB107AQ8IZN7 70 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ADGRG2Q8IZP9 1017 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 HLA-CQ95604 372 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 NKD2Q969F2 451 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 DGCR14Q96DF8 476 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 SPATA13Q96N96 652 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 FEM1AQ9BSK4 669 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 USP29Q9HBJ7 922 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDH9Q9HC56 1237 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TMEM248Q9NWD8 314 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 RCOR3Q9P2K3 495 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TBC1D14Q9P2M4 693 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC9A3R1O14745 358 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TRMUO75648 421 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ADH1CP00326 375 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms