RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 FOXF2Q12947 444 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 LRRC32Q14392 662 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 TCP11X2Q5H9J9 407 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 RAB41Q5JT25 222 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 DGKKQ5KSL6 1271 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 PM20D1Q6GTS8 502 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 TRIM65Q6PJ69 517 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 SASS6Q6UVJ0 657 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 TOGARAM2Q6ZUX3 1019 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 PHLDB2Q86SQ0 1253 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 SLC47A2Q86VL8 602 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 DDX42Q86XP3 938 aaKnown RBP eCLIP4.71□□□□□ -1.66
NUP54-206ENST00000508465 DENND1CQ8IV53 801 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 FMNL3Q8IVF7 1028 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 SIX6OS1Q8N1H7 587 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 WDTC1Q8N5D0 677 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 RPLP0P6Q8NHW5 317 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 ZFP28Q8NHY6 868 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 SCARB1Q8WTV0 552 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 CD101Q93033 1021 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 PNKPQ96T60 521 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 NDST4Q9H3R1 872 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 PLCB1Q9NQ66 1216 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 SPHK2Q9NRA0 654 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 OXSMQ9NWU1 459 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 ZSCAN32Q9NX65 697 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 TBC1D14Q9P2M4 693 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 RNF7Q9UBF6 113 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 CYTH4Q9UIA0 394 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 DNAJC12Q9UKB3 198 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 FBXO4Q9UKT5 387 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 AGO1Q9UL18 857 aaKnown RBP4.71□□□□□ -1.66
NUP54-206ENST00000508465 SLC8A2Q9UPR5 921 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 CNTN6Q9UQ52 1028 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 PTPRDP23468 1912 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 DENND4CQ5VZ89 1909 aa4.71□□□□□ -1.66
NUP54-206ENST00000508465 CACNA1HO95180 2353 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 WASH3PC4AMC7 463 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 NEDD8-MDP1E9PL57 170 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 PPP1R12AO14974 1030 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 DCLK1O15075 740 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 TULP3O75386 442 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 GRAP2O75791 330 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 KAT7O95251 611 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 KLF8O95600 359 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 FYNP06241 537 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 SETSIPP0DME0 302 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 TYRP14679 529 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 FDXRP22570 491 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 GPD2P43304 727 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 MAGEA9P43362 315 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 ABCG1P45844 678 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 TUBP50607 506 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 CCR3P51677 355 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 DAOAP59103 153 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 PITX1P78337 314 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 COG7P83436 770 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 GCNT1Q02742 428 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 GAD2Q05329 585 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 MGAT5Q09328 741 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 RAPGEF1Q13905 1077 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 DMC1Q14565 340 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 DRAP1Q14919 205 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 ZNF169Q14929 603 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 KRT31Q15323 416 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 CCDC6Q16204 474 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 ZNF528Q3MIS6 628 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 CCDC183Q5T5S1 534 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 FAM102AQ5T9C2 384 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 KLHDC7AQ5VTJ3 777 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 TAF3Q5VWG9 929 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 SYPL2Q5VXT5 272 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 CAVIN1Q6NZI2 390 aaKnown RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 RFWD3Q6PCD5 774 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 FAM114A1Q8IWE2 563 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 KIAA2013Q8IYS2 634 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 ARHGAP18Q8N392 663 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 ALLCQ8N6M5 410 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 AOPEPQ8N6M6 819 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 FRMD1Q8N878 549 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 SUMF1Q8NBK3 374 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 RNF139Q8WU17 664 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 SORCS1Q8WY21 1168 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 MSANTD3Q96H12 275 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 ACOX2Q99424 681 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 BBS2Q9BXC9 721 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 PNPLA8Q9NP80 782 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 PRMT8Q9NR22 394 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 SEMA4GQ9NTN9 838 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 DNAJC17Q9NVM6 304 aaKnown RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 ANO10Q9NW15 660 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 CLIC5Q9NZA1 410 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 KLHL42Q9P2K6 505 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 WDR35Q9P2L0 1181 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 DEC1Q9P2X7 70 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 LSM7Q9UK45 103 aaKnown RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 CLEC4EQ9ULY5 219 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 NAALADL1Q9UQQ1 740 aa4.7□□□□□ -1.66
NUP54-206ENST00000508465 PTPRZ1P23471 2315 aaPredicted RBP4.7□□□□□ -1.66
NUP54-206ENST00000508465 OBSL1O75147 1896 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms