RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 PLEKHA5Q9HAU0 1116 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 ITM2CQ9NQX7 267 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 FAM198AQ9UFP1 575 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 TIMM22Q9Y584 194 aa6.25□□□□□ -1.41
VPS13D-209ENST00000487188 MDM4O15151 490 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 MFSD11O43934 449 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ICMTO60725 284 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TSPAN9O75954 239 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ENDOD1O94919 500 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ITGB3P05106 788 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 UMPSP11172 480 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PSMD8P48556 350 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 GSK3BP49841 420 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ARSFP54793 590 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 GJA9P57773 515 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 DAB2P98082 770 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 Q3C1V9 767 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 AGAP9Q5VTM2 703 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 SPESP1Q6UW49 350 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 HACD2Q6Y1H2 254 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 FKBP9P1Q75LS8 142 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 AMIGO3Q86WK7 504 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 SMG8Q8ND04 991 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 OR6Q1Q8NGQ2 317 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 GRPEL2Q8TAA5 225 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ITFG1Q8TB96 612 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 MCOLN3Q8TDD5 553 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ARNTL2Q8WYA1 636 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ELMO1Q92556 727 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 MED30Q96HR3 178 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CSF3RQ99062 836 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 MUC13Q9H3R2 512 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 DSN1Q9H410 356 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 FBRSL1Q9HCM7 1045 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 UBP1Q9NZI7 540 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TEKT2Q9UIF3 430 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 SYNPO2Q9UMS6 1093 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 BTBD3Q9Y2F9 522 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TMX2Q9Y320 296 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 LINC00854A0A1B0GVQ3 168 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 A8MV72 311 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 FADS2O95864 444 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CHRNA1P02708 482 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ALDH3A2P51648 485 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 OR2B6P58173 313 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 YWHAHQ04917 246 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 BST2Q10589 180 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 HIST2H2ACQ16777 129 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CCDC58Q4VC31 144 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 C6orf141Q5SZD1 244 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 DESI1Q6ICB0 168 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 RFPL4BQ6ZWI9 263 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 RPS27LQ71UM5 84 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 NT5DC4Q86YG4 428 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PSTKQ8IV42 348 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 LGI2Q8N0V4 545 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 LSMEM2Q8N112 164 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 OR8H2Q8N162 312 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PIK3C3Q8NEB9 887 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 OR13J1Q8NGT2 312 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TMBIM1Q969X1 311 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PIWIL1Q96J94 861 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 KCTD15Q96SI1 283 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PDCD2LQ9BRP1 358 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ELOVL4Q9GZR5 314 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TOR3AQ9H497 397 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PRDM12Q9H4Q4 367 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CDHR5Q9HBB8 845 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF302Q9NR11 478 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 EXD2Q9NVH0 621 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 DPP3Q9NY33 737 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 USE1Q9NZ43 259 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF219Q9P2Y4 722 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 HMGXB4Q9UGU5 601 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TPRKBQ9Y3C4 175 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 MFHAS1Q9Y4C4 1052 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 PCDHGA11Q9Y5H2 935 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 UGT2B11O75310 529 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 UPK1BO75841 260 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 LCP1P13796 627 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CHRM3P20309 590 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CRHBPP24387 322 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TYSND1Q2T9J0 566 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 SNAP47Q5SQN1 464 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 IRAK1BP1Q5VVH5 260 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CCBE1Q6UXH8 406 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 GADL1Q6ZQY3 521 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 BNIPLQ7Z465 357 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 CLEC14AQ86T13 490 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 SCUBE3Q8IX30 993 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ZNF567Q8N184 647 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TXNDC5Q8NBS9 432 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 FAR1Q8WVX9 515 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 RMDN1Q96DB5 314 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 C19orf60Q96EN9 201 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 RPL10LQ96L21 214 aaKnown RBP6.24□□□□□ -1.41
VPS13D-209ENST00000487188 ZDHHC15Q96MV8 337 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 HAPLN2Q9GZV7 340 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 NUAK2Q9H093 628 aa6.24□□□□□ -1.41
VPS13D-209ENST00000487188 TRMT13Q9NUP7 481 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms