RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CLSTN3Q9BQT9 956 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 MRPL9Q9BYD2 267 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 ABCB8Q9NUT2 735 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CLEC4EQ9ULY5 219 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 RAP2CQ9Y3L5 183 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 XIRP2A4UGR9 3374 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 H3BMM5 538 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CNPP09543 421 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 WASP42768 502 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PFKPQ01813 784 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 VPS26BQ4G0F5 336 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 STEAP4Q687X5 459 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 KCTD11Q693B1 232 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 BBS7Q8IWZ6 715 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 LMNTD1Q8N9Z9 388 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 SLAIN1Q8ND83 568 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 BHLHE22Q8NFJ8 381 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 VPS33AQ96AX1 596 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 C8orf48Q96LL4 319 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 SNX13Q9Y5W8 968 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 TEX28O15482 410 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 ALDH1A2O94788 518 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CLDN7O95471 211 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CRABP2P29373 138 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 MSANTD2Q6P1R3 559 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 KYQ8NBH2 561 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 WDR41Q9HAD4 459 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 TNFRSF12AQ9NP84 129 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 TAS2R13Q9NYV9 303 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 SLCO3A1Q9UIG8 710 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 ANGPTL2Q9UKU9 493 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 TRAF6Q9Y4K3 522 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 INPP4BO15327 924 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 IPO13O94829 963 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 HGFP14210 728 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 DBN1Q16643 649 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 TMEM259Q4ZIN3 620 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ZNF648Q5T619 568 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CCSAPQ6IQ19 270 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 IMP4Q96G21 291 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 EIF2B4Q9UI10 523 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 SLC4A7Q9Y6M7 1214 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 MAP1BP46821 2468 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 MYOCOSA0A1B0GUC4 107 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 FAM149AA5PLN7 773 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 C8AP07357 584 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 VHLP40337 213 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CCNFP41002 786 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 FOXA1P55317 472 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 RAD51Q06609 339 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ZYG11AQ6WRX3 759 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 BNC2Q6ZN30 1099 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 MBOAT1Q6ZNC8 495 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CILP2Q8IUL8 1156 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 FAM126BQ8IXS8 530 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ZNF461Q8TAF7 563 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ZFYVE19Q96K21 471 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CNBD2Q96M20 576 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 SEPHS2Q99611 448 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 HGH1Q9BTY7 390 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 PRKD2Q9BZL6 878 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CLPBQ9H078 707 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 UPF3AQ9H1J1 476 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 FAM124BQ9H5Z6 455 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 NSMCE4AQ9NXX6 385 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 APPL1Q9UKG1 709 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 VPS26AO75436 327 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 NDST3O95803 873 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 S100BP04271 92 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 PRDX3P30048 256 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 SLC34A1Q06495 639 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 BCL2L1Q07817 233 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 CTC1Q2NKJ3 1217 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 RFLNAQ6ZTI6 216 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ELMOD1Q8N336 334 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 OR13J1Q8NGT2 312 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 PTCD3Q96EY7 689 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 MRPL57Q9BQC6 102 aaKnown RBP13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 BOCQ9BWV1 1114 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 BBS2Q9BXC9 721 aa13.72□□□□□ -0.21
CCDC88A-211ENST00000471947 ANGPT2O15123 496 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 HOXA2O43364 376 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 XRCC1P18887 633 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 PAX7P23759 505 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 CTSOP43234 321 aaPredicted RBP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 ANGPTL8Q6UXH0 198 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 DSELQ8IZU8 1212 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 CEP70Q8NHQ1 597 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 EEF1AKMT1Q8WVE0 214 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 EBF2Q9HAK2 575 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 AKAP10O43572 662 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 SMNDC1O75940 238 aaKnown RBP eCLIP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 ANPEPP15144 967 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 PEX2P28328 305 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 HMOX2P30519 316 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 MAGEA6P43360 314 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 THOP1P52888 689 aa13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 PPP1R8Q12972 351 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-211ENST00000471947 TMC5Q6UXY8 1006 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms