RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CDHR2Q9BYE9 1310 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ALADP13716 330 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 RPL6Q02878 288 aaKnown RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 TRPV4Q9HBA0 871 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ABLIM1O14639 778 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 MMP13P45452 471 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 MTF1Q14872 753 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 HAGHLQ6PII5 290 aaPredicted RBP17.63■□□□□ 0.41
SMAD4-201ENST00000342988 AP2M1Q96CW1 435 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 SLC39A3Q9BRY0 314 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 NUDT15Q9NV35 164 aa17.63■□□□□ 0.41
SMAD4-201ENST00000342988 ARPC4-TTLL3A0A0A6YYG9 625 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 SUPT20HL2P0C7V6 817 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 PRKCDQ05655 676 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 ATP13A3Q9H7F0 1226 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TAF1CQ15572 869 aaPredicted RBP17.62■□□□□ 0.41
SMAD4-201ENST00000342988 APTXQ7Z2E3 356 aaKnown RBP17.62■□□□□ 0.41
SMAD4-201ENST00000342988 COMTD1Q86VU5 262 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 OR14K1Q8NGZ2 314 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TCP10LQ8TDR4 215 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 SUSD6Q92537 303 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 NSMCE3Q96MG7 304 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TCF7L1Q9HCS4 588 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 ST3GAL1Q11201 340 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 BORCS8Q96FH0 119 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 MAGEL2Q9UJ55 1249 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 CAMTA2O94983 1202 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 SLC12A3P55017 1021 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 PAMR1Q6UXH9 720 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TPGS1Q6ZTW0 290 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 ADAMTSL2Q86TH1 951 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 HEXDCQ8WVB3 486 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 C2orf49Q9BVC5 232 aaPredicted RBP17.62■□□□□ 0.41
SMAD4-201ENST00000342988 USP27XA6NNY8 438 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 HHLA1C9JL84 531 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 MATN4O95460 622 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 PTPN6P29350 595 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 ASMTP46597 345 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 WDSUB1Q8N9V3 476 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 GPRC5AQ8NFJ5 357 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF75CPQ92670 426 aaPredicted RBP17.62■□□□□ 0.41
SMAD4-201ENST00000342988 OR52E6Q96RD3 313 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 KXD1Q9BQD3 176 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 WDR27A2RRH5 827 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 C15orf59Q2T9L4 293 aaPredicted RBP17.62■□□□□ 0.41
SMAD4-201ENST00000342988 SPESP1Q6UW49 350 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 KCTD4Q8WVF5 259 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 BCKDKO14874 412 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 DDX6P26196 483 aaKnown RBP eCLIP17.62■□□□□ 0.413e-7■■■■□ 23.2
SMAD4-201ENST00000342988 ZNF844Q08AG5 666 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TTI2Q6NXR4 508 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 TREML1Q86YW5 311 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 SLC30A8Q8IWU4 369 aa17.62■□□□□ 0.41
SMAD4-201ENST00000342988 RPL21P46778 160 aaKnown RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 PRR5P85299 388 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 FAM46CQ5VWP2 391 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ALG1LQ6GMV1 187 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 SLC30A6Q6NXT4 461 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 TAPT1Q6NXT6 567 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 MSL3Q8N5Y2 521 aaKnown RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 COQ8BQ96D53 544 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 CLCA1A8K7I4 914 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 PCDHGA12O60330 932 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 MICAL2O94851 1124 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 PON3Q15166 354 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 SPIN3Q5JUX0 258 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 MAGEE1Q9HCI5 957 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 UBXN7O94888 489 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 IL12BP29460 328 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 FCGRTP55899 365 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF782Q6ZMW2 699 aaPredicted RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 UFD1Q92890 307 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 OR5B12Q96R08 314 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF69Q9UC07 566 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 FADS2O95864 444 aaKnown RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 DNAJA1P31689 397 aaKnown RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 RORCP51449 518 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 DHDDSQ86SQ9 333 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 OR2AJ1Q8NGZ0 328 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 TMPRSS11EQ9UL52 423 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 LOXHD1Q8IVV2 1947 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF823P16415 610 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 KLRC2P26717 231 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 CBLBQ13191 982 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 GALNT6Q8NCL4 622 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ANKRD7Q92527 254 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 UPF1Q92900 1129 aaKnown RBP eCLIP17.61■□□□□ 0.411e-6■■■□□ 15.7
SMAD4-201ENST00000342988 MTHFRP42898 656 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 MCAMP43121 646 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 KCTD8Q6ZWB6 473 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 TRIM43Q96BQ3 446 aaPredicted RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 PADI2Q9Y2J8 665 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 BBIP1A8MTZ0 92 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 TRMUO75648 421 aaKnown RBP17.61■□□□□ 0.41
SMAD4-201ENST00000342988 MYBP10242 640 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF20P17024 532 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 CASP9P55211 416 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 IRF8Q02556 426 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 SLC16A9Q7RTY1 509 aa17.61■□□□□ 0.41
SMAD4-201ENST00000342988 ZNF550Q7Z398 422 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms