RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PDE1BQ01064 536 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 CUL4BQ13620 913 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 CCDC96Q2M329 555 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 EEF1A1P5Q5VTE0 462 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 C15orf39Q6ZRI6 1047 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 FOXRED2Q8IWF2 684 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 STPG4Q8N801 248 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 RAB40AQ8WXH6 277 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 STAMBPL1Q96FJ0 436 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 SIN3AQ96ST3 1273 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 ASCL2Q99929 193 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 LMAN2LQ9H0V9 348 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 PDZD7Q9H5P4 517 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 ZNF624Q9P2J8 865 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-208ENST00000625916 CARD8Q9Y2G2 431 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 DERAQ9Y315 318 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 OR2W1Q9Y3N9 320 aa2.78□□□□□ -1.96
SCN1A-208ENST00000625916 PABPN1LA6NDY0 278 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 IGLV1-44P01699 117 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 CSTBP04080 98 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 ETFAP13804 333 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 CLK1P49759 484 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 EFNA5P52803 228 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 CLDN2P57739 230 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 ISL1P61371 349 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 GNB1P62873 340 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 GTF2H2Q13888 395 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 EIF2S3LQ2VIR3 472 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 FAM83BQ5T0W9 1011 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 LRRC8EQ6NSJ5 796 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 GTF2H2CQ6P1K8 395 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 KCTD18Q6PI47 426 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 ASB18Q6ZVZ8 466 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 NOTCH2NLQ7Z3S9 236 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 LTV1Q96GA3 475 aaPredicted RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 ART5Q96L15 291 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 MTERF1Q99551 399 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 CMKLR1Q99788 373 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 WDR13Q9H1Z4 485 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 EPHX3Q9H6B9 360 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 SAYSD1Q9NPB0 183 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 BABAM1Q9NWV8 329 aa2.77□□□□□ -1.97
SCN1A-208ENST00000625916 SRP68Q9UHB9 627 aaKnown RBP2.77□□□□□ -1.97
SCN1A-208ENST00000625916 KRTAP16-1A8MUX0 517 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 NR5A2O00482 541 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 PER2O15055 1255 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 SETSIPP0DME0 302 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CORO1AP31146 461 aaKnown RBP2.76□□□□□ -1.97
SCN1A-208ENST00000625916 DDIT3P35638 169 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 DCTP40126 519 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 MMP14P50281 582 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 HNRNPH2P55795 449 aaKnown RBP2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CHRNDQ07001 517 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 GAGE5Q13069 117 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 GAGE6Q13070 117 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 KRT24Q2M2I5 525 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CTXN3Q4LDR2 81 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 LCE3AQ5TA76 89 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 BSPRYQ5W0U4 402 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 SPINK14Q6IE38 97 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 ANKRD54Q6NXT1 300 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 MTSS1LQ765P7 747 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 NOXA1Q86UR1 476 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 FAM160B2Q86V87 743 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CEP70Q8NHQ1 597 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 WDR20Q8TBZ3 569 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 SDCCAG3Q96C92 435 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 FBXL8Q96CD0 374 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 ZNF689Q96CS4 500 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-208ENST00000625916 TWNKQ96RR1 684 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CRB3Q9BUF7 120 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 ESRP2Q9H6T0 727 aaKnown RBP2.76□□□□□ -1.97
SCN1A-208ENST00000625916 ARNT2Q9HBZ2 717 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 MKKSQ9NPJ1 570 aaPredicted RBP2.76□□□□□ -1.97
SCN1A-208ENST00000625916 SLC52A3Q9NQ40 469 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 PAK5Q9P286 719 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 CTNNAL1Q9UBT7 734 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 GDAQ9Y2T3 454 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 STON1Q9Y6Q2 735 aa2.76□□□□□ -1.97
SCN1A-208ENST00000625916 IGLV5-45A0A087WSX0 123 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 A0A0G2JLW4 131 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 A0A0J9YWU9 116 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 SH2D7A6NKC9 451 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 PSMD14O00487 310 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 BCAT2O15382 392 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 MMP2P08253 660 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 CYC1P08574 325 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 IFIT2P09913 472 aaKnown RBP2.75□□□□□ -1.97
SCN1A-208ENST00000625916 PRSS56P0CW18 603 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 BDKRB2P30411 391 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 RAD23BP54727 409 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 FOXO1Q12778 655 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 BLMHQ13867 455 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 WDR38Q5JTN6 314 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 FAM171BQ6P995 826 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 C17orf99Q6UX52 265 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 GPAT4Q86UL3 456 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 P2RY8Q86VZ1 359 aa2.75□□□□□ -1.97
SCN1A-208ENST00000625916 APLFQ8IW19 511 aaPredicted RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms