RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 MAPKAPK2P49137 400 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 TNFAIP1Q13829 316 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 AGAP6Q5VW22 663 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SWSAP1Q6NVH7 229 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ADCK1Q86TW2 530 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 RDM1Q8NG50 284 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 AGAP4Q96P64 663 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 MECRQ9BV79 373 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 APOL5Q9BWW9 433 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 AKIP1Q9NQ31 210 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 MAFBQ9Y5Q3 323 aaPredicted RBP10.87□□□□□ -0.67
CLK3-226ENST00000569406 PSAT1Q9Y617 370 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 ADGRA2Q96PE1 1338 aa10.87□□□□□ -0.67
CLK3-226ENST00000569406 SH3D21A4FU49 640 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TSC22D2O75157 780 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 OR2B6P58173 313 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ACTR2P61160 394 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 S100A12P80511 92 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 GALNT3Q14435 633 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 PLEKHG6Q3KR16 790 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 HSF5Q4G112 596 aaPredicted RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 ANGEL2Q5VTE6 544 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 ZNF544Q6NX49 715 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 XRRA1Q6P2D8 792 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 RHBDF2Q6PJF5 856 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 C16orf62Q7Z3J2 963 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 NAT16Q8N8M0 369 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 RAB2BQ8WUD1 216 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 USP13Q92995 863 aaPredicted RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 RADILQ96JH8 1075 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 BEX2Q9BXY8 128 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TMEM8AQ9HCN3 771 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 DTLQ9NZJ0 730 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 PSMC3IPQ9P2W1 217 aaPredicted RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 TRPS1Q9UHF7 1281 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 MICAL3Q7RTP6 2002 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 MCM3APO60318 1980 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 RNF103O00237 685 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 PTP4A3O75365 173 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 GNRH1P01148 92 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ACO1P21399 889 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 GRIK1P39086 918 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 LEPRP48357 1165 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 SCNN1GP51170 649 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 LSM3P62310 102 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 CCNA1P78396 465 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CNTN2Q02246 1040 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 YIF1BQ5BJH7 314 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 FSCBQ5H9T9 825 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ZFP1Q6P2D0 407 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CRTC3Q6UUV7 619 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 KIAA1324Q6UXG2 1013 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 ZBTB49Q6ZSB9 765 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 DPH6Q7L8W6 267 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ANKS1BQ7Z6G8 1248 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CRLF3Q8IUI8 442 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ZNF276Q8N554 614 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 SNX31Q8N9S9 440 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 GLB1L3Q8NCI6 653 aaPredicted RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 TMC2Q8TDI7 906 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CYGBQ8WWM9 190 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ELMO1Q92556 727 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 SLC47A1Q96FL8 570 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 HSFY1Q96LI6 401 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 SERPINI1Q99574 410 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TUBA1CQ9BQE3 449 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 IFT46Q9NQC8 304 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 EVA1BQ9NVM1 165 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ANAPC7Q9UJX3 599 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLK3-226ENST00000569406 TRIM49D1C9J1S8 452 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 E7ENX8 843 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 PCSK2P16519 638 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CKMT2P17540 419 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 CYP3A5P20815 502 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 IL12AP29459 219 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 MAPK4P31152 587 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 EPHX2P34913 555 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 MTHFRP42898 656 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TMBIM6P55061 237 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ERVFC1P60507 584 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 SNRPD2P62316 118 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 DAB2P98082 770 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 NAB1Q13506 487 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TYSND1Q2T9J0 566 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 TREML2Q5T2D2 321 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 IZUMO3Q5VZ72 239 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 RAP1GAP2Q684P5 730 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 NECTIN4Q96NY8 510 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 ZSWIM1Q9BR11 485 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 KIFC1Q9BW19 673 aa10.86□□□□□ -0.67
CLK3-226ENST00000569406 REXO4Q9GZR2 422 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 DHX33Q9H6R0 707 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 APOBEC3GQ9HC16 384 aaKnown RBP10.86□□□□□ -0.67
CLK3-226ENST00000569406 BPTFQ12830 3046 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 M0R3G1 203 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 YES1P07947 543 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CD40LGP29965 261 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ARFIP1P53367 373 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CDC20Q12834 499 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms