RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 KCNJ9Q92806 393 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 P2RX5Q93086 422 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 MCRS1Q96EZ8 462 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RADILQ96JH8 1075 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TTC14Q96N46 770 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 HAPLN3Q96S86 360 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RPP25Q9BUL9 199 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CINPQ9BW66 212 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 GPR87Q9BY21 358 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RANBP17Q9H2T7 1088 aaKnown RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 SH2D4AQ9H788 454 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TRPM5Q9NZQ8 1165 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 CTTNBP2NLQ9P2B4 639 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TBC1D14Q9P2M4 693 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 HSFX1Q9UBD0 423 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 KCNE5Q9UJ90 142 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 GMEB2Q9UKD1 530 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 PCDHGB4Q9UN71 923 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 UBR5O95071 2799 aaPredicted RBP3.97□□□□□ -1.77
LIMA1-208ENST00000551691 RALGAPA1Q6GYQ0 2036 aa3.97□□□□□ -1.77
LIMA1-208ENST00000551691 TEX13CA0A0J9YWL9 993 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 A0A1W2PS29 197 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 FAM90A20PA6NIJ5 464 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 C3orf70A6NLC5 250 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 AGPSO00116 658 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PTP4A3O75365 173 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 IDH1O75874 414 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 HEXIM1O94992 359 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SCAF4O95104 1147 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CHRNA1P02708 482 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 RETP07949 1114 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CSH1P0DML2 217 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CSH2P0DML3 217 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 GHRP10912 638 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 EPCAMP16422 314 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PORP16435 677 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 HOXB8P17481 243 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 APOBEC3AP31941 199 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 GALNSP34059 522 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 LIPAP38571 399 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PBX3P40426 434 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PDE1AP54750 535 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 TIRAPP58753 221 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CREB5Q02930 508 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 OCA2Q04671 838 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 ARHGAP1Q07960 439 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 WDR43Q15061 677 aaKnown RBP eCLIP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 ACOX1Q15067 660 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 RASA2Q15283 850 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF528Q3MIS6 628 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SPOUT1Q5T280 376 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 STPG1Q5TH74 334 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 DCLRE1AQ6PJP8 1040 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CYP20A1Q6UW02 462 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SEPT14Q6ZU15 432 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 H1FNTQ75WM6 255 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 TMPRSS6Q8IU80 811 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SPATA18Q8TC71 538 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SLC2A12Q8TD20 617 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 ZNF483Q8TF39 744 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 NELL1Q92832 810 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 FAM120BQ96EK7 910 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 ZMAT2Q96NC0 199 aaKnown RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 OSBPL9Q96SU4 736 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 AGAP2Q99490 1192 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PRDM13Q9H4Q3 707 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 TRIM36Q9NQ86 728 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 BEX4Q9NWD9 120 aaPredicted RBP3.96□□□□□ -1.78
LIMA1-208ENST00000551691 HCFC1R1Q9NWW0 138 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 EHD2Q9NZN4 543 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 KCND2Q9NZV8 630 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 CLIP2Q9UDT6 1046 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 FBXO40Q9UH90 709 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 KLK13Q9UKR3 277 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SARDHQ9UL12 918 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 SH3BP1Q9Y3L3 701 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 PCDHB2Q9Y5E7 798 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 RAI2Q9Y5P3 530 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 FPGT-TNNI3KV9GXZ4 949 aa3.96□□□□□ -1.78
LIMA1-208ENST00000551691 EMSYQ7Z589 1322 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 FOCADQ5VW36 1801 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 DOPEY1Q5JWR5 2465 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 EIF3CLB5ME19 914 aaKnown RBP3.95□□□□□ -1.78
LIMA1-208ENST00000551691 M0QYT0 321 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 HAS3O00219 553 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 LEFTY2O00292 366 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 CES2O00748 559 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 SYN3O14994 580 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 VILLO15195 856 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 PPM1DO15297 605 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 NKX2-8O15522 239 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 HBP1O60381 514 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 TBCAO75347 108 aaKnown RBP3.95□□□□□ -1.78
LIMA1-208ENST00000551691 VNN1O95497 513 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 LAMP2P13473 410 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 CHN1P15882 459 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 CREB1P16220 341 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 CASTP20810 708 aaKnown RBP3.95□□□□□ -1.78
LIMA1-208ENST00000551691 SAT1P21673 171 aa3.95□□□□□ -1.78
LIMA1-208ENST00000551691 CALML3P27482 149 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms