RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ENO3P13929 434 aaPredicted RBP18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 HMGA1P17096 107 aaKnown RBP18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 SCNN1BP51168 640 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 SUOXP51687 545 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 THOP1P52888 689 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 OXCT1P55809 520 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 MRPS35P82673 323 aaKnown RBP18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 DSG1Q02413 1049 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 CDC16Q13042 620 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 PPP1R3AQ16821 1122 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 PIGGQ5H8A4 983 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 HECTD3Q5T447 861 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 BNC2Q6ZN30 1099 aaPredicted RBP18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 PLCD3Q8N3E9 789 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 BBS5Q8N3I7 341 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 HMGCLL1Q8TB92 370 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 SMIM14Q96QK8 99 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 CORO1CQ9ULV4 474 aaPredicted RBP18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 MICAL3Q7RTP6 2002 aa18.54■□□□□ 0.56
PRPF40B-208ENST00000548436 CCDC189A1A4V9 331 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PITPNM1O00562 1244 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 STC2O76061 302 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 SUPT7LO94864 414 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CR2P20023 1033 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 TUFMP49411 452 aaKnown RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 ZNF140P52738 457 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 STC1P52823 247 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 ZNF423Q2M1K9 1284 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 UNC50Q53HI1 259 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CLEC6AQ6EIG7 209 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 GK5Q6ZS86 529 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PGAM4Q8N0Y7 254 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 LRRC43Q8N309 656 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 RYBPQ8N488 228 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 WBP2Q969T9 261 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 SERPINI1Q99574 410 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 NPAS2Q99743 824 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CFHR5Q9BXR6 569 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 EFCAB1Q9HAE3 211 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 NLE1Q9NVX2 485 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 VPS28Q9UK41 221 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 TRAF6Q9Y4K3 522 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 INSIG1O15503 277 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CFLARO15519 480 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PENKP01210 267 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PRLP01236 227 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 RAG1P15918 1043 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 ZNF37AP17032 561 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 OGNP20774 298 aaKnown RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CORO1AP31146 461 aaKnown RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 MSX2P35548 267 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PKNOX1P55347 436 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 NFKB2Q00653 900 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 OR4D1Q15615 310 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 TYSND1Q2T9J0 566 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 USP41Q3LFD5 358 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 LPCAT4Q643R3 524 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 CYHR1Q6ZMK1 362 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 SLAIN1Q8ND83 568 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 PDZD8Q8NEN9 1154 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 MDGA1Q8NFP4 955 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 EXT2Q93063 718 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 AARSD1Q9BTE6 412 aaKnown RBP18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 RNF38Q9H0F5 515 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 RETREG1Q9H6L5 497 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 WDR41Q9HAD4 459 aa18.53■□□□□ 0.56
PRPF40B-208ENST00000548436 TANC1Q9C0D5 1861 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 H3BMM5 538 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 STX16-NPEPL1H3BU86 382 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 TSPAN3O60637 253 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 CLDN11O75508 207 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 UPP2O95045 317 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 HSPA1AP0DMV8 641 aaKnown RBP18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 HSPA1BP0DMV9 641 aaKnown RBP18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 XRCC1P18887 633 aaPredicted RBP18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 PMLP29590 882 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 INHBCP55103 352 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 ART3Q13508 389 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 CEACAM7Q14002 265 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 CYTH1Q15438 398 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 LRRC36Q1X8D7 754 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 KLHDC10Q6PID8 442 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 SDCCAG8Q86SQ7 713 aaPredicted RBP18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 AFAP1L2Q8N4X5 818 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 OR4K2Q8NGD2 314 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 OVCA2Q8WZ82 227 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 USP13Q92995 863 aaPredicted RBP18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 RMDN1Q96DB5 314 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 ZBED2Q9BTP6 218 aa18.52■□□□□ 0.56
PRPF40B-208ENST00000548436 ILVBLA1L0T0 632 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 DPPA5A6NC42 116 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CRTAMO95727 393 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 RHOCP08134 193 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 IRF1P10914 325 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 ALDH7A1P49419 539 aaKnown RBP18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 CCL23P55773 120 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 HERVK_113P63132 956 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 TMEM154Q6P9G4 183 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 C16orf59Q7L2K0 433 aa18.51■□□□□ 0.55
PRPF40B-208ENST00000548436 RNF148Q8N7C7 305 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms