RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SPATA6Q9NWH7 488 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TRMT6Q9UJA5 497 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SHOC2Q9UQ13 582 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PRELID3BQ9Y3B1 194 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 KAT6AQ92794 2004 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 F8W036 122 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF195O14628 629 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 KPNA5O15131 536 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 SLC7A1P30825 629 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TSPAN7P41732 249 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 HSD17B7P56937 341 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 SSTP61278 116 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 RELQ04864 619 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 LTB4RQ15722 352 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 COLEC12Q5KU26 742 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 FCRLBQ6BAA4 426 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TYW3Q6IPR3 259 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 LIPIQ6XZB0 460 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PAGE2Q7Z2X7 111 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TSPYL5Q86VY4 417 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 CAMK1DQ8IU85 385 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 NAT16Q8N8M0 369 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 OR13J1Q8NGT2 312 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 FAM110BQ8TC76 370 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 SDR42E1Q8WUS8 393 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 DEDD2Q8WXF8 326 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 NXNL1Q96CM4 212 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PHOX2BQ99453 314 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PCDHAC1Q9H158 963 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 SAV1Q9H4B6 383 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 SOX17Q9H6I2 414 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 REV1Q9UBZ9 1251 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PCDHA8Q9Y5H6 950 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PCDHA2Q9Y5H9 948 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 AUP1Q9Y679 476 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 LINC00862A6NCI5 91 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 GSG1L2A8MUP6 293 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 NRP1O14786 923 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 AKAP3O75969 853 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 JUNP05412 331 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 INHBAP08476 426 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PLA2G4BP0C869 781 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 ELK4P28324 431 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TPMTP51580 245 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 BTN1A1Q13410 526 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 FNBP1LQ5T0N5 605 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 INTS11Q5TA45 600 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 MRPL10Q7Z7H8 261 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 FBXO36Q8NEA4 188 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 GOT1L1Q8NHS2 421 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 PHOSPHO2Q8TCD6 241 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 DYNC2LI1Q8TCX1 351 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 ASB9Q96DX5 294 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 BBS2Q9BXC9 721 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TMEM168Q9H0V1 697 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TUFT1Q9NNX1 390 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TAS2R9Q9NYW1 312 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 GMPR2Q9P2T1 348 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 TSR3Q9UJK0 312 aaKnown RBP9.48□□□□□ -0.89
CLIP1-214ENST00000540539 GINS2Q9Y248 185 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 ANKRD6Q9Y2G4 727 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 ACTL7AQ9Y615 435 aa9.48□□□□□ -0.89
CLIP1-214ENST00000540539 RAB19A4D1S5 217 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 AKR7A2O43488 359 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 DDNO94850 711 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 GABARAPO95166 117 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 VAPBO95292 243 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 HSMCR30P0CW71 290 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CYP11B1P15538 503 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 STMN1P16949 149 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CAPGP40121 348 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 AP1S2P56377 157 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 BAATQ14032 418 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 EFR3AQ14156 821 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 PSMD5Q16401 504 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 RETSATQ6NUM9 610 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 DPP9Q86TI2 863 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 MICALL2Q8IY33 904 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 PHF21AQ96BD5 680 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 FOPNLQ96NB1 174 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 PRRG3Q9BZD7 231 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 SLIRPQ9GZT3 109 aaKnown RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 COPS3Q9UNS2 423 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 HRH3Q9Y5N1 445 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CSNK1G3Q9Y6M4 447 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CYP3A7-CYP3A51PA0A087WV96 503 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CLRN2A0PK11 232 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 NUPL2O15504 423 aaKnown RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 RGS5O15539 181 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 FAM155BO75949 473 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 TOP3BO95985 862 aaKnown RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 NPPAP01160 153 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CYP3A7P24462 503 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 MAOBP27338 520 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 SLC1A6P48664 564 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF280AP59817 542 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 LSM3P62310 102 aaKnown RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 SNRPD2P62316 118 aaKnown RBP9.47□□□□□ -0.89
CLIP1-214ENST00000540539 CYP4F2P78329 520 aa9.47□□□□□ -0.89
CLIP1-214ENST00000540539 NKX3-2P78367 333 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms