RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KDM4CQ9H3R0 1056 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 KLF15Q9UIH9 416 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SLC6A14Q9UN76 642 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SHOC2Q9UQ13 582 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SPO11Q9Y5K1 396 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 PIKFYVEQ9Y2I7 2098 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 A0A0J9YYE9 177 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 ARHGAP33O14559 1287 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 ZSCAN12O43309 604 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 TSPAN6O43657 245 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 RECQL5O94762 991 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 CLDN7O95471 211 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 TRBC1P01850 177 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 SLC4A1P02730 911 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 CD38P28907 300 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 RACK1P63244 317 aaKnown RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 XRCC4Q13426 336 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 IRF4Q15306 451 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 CDKN3Q16667 212 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 HLA-BQ31612 363 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 UAP1L1Q3KQV9 507 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 TMEM52BQ4KMG9 183 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 LRRC66Q68CR7 880 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 Q6ZVL8 140 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 DPPA4Q7L190 304 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 SLC25A41Q8N5S1 370 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 C12orf50Q8NA57 414 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 CXorf40AQ8TE69 158 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 PTCD2Q8WV60 388 aaKnown RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 SCRN2Q96FV2 425 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 CAMK1GQ96NX5 476 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 MCCC1Q96RQ3 725 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-202ENST00000616974 PCED1AQ9H1Q7 454 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 OR1A2Q9Y585 309 aa13.53□□□□□ -0.24
LINC00540-202ENST00000616974 AGTP01019 485 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 ATXN1LP0C7T5 689 aaKnown RBP13.52□□□□□ -0.24
LINC00540-202ENST00000616974 PTSQ03393 145 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 SHBQ15464 509 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 NAPEPLDQ6IQ20 393 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 TTC27Q6P3X3 843 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 PRELID2Q8N945 189 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 IPMKQ8NFU5 416 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 SCAMP4Q969E2 229 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 RAB7BQ96AH8 199 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 AGAP2Q99490 1192 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 LGR4Q9BXB1 951 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 JRKLQ9Y4A0 524 aa13.52□□□□□ -0.24
LINC00540-202ENST00000616974 HACD1B0YJ81 288 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 GPR39O43194 453 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 BUD23O43709 281 aaKnown RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 SDC3O75056 442 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 LRP3O75074 770 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 C1SP09871 688 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 ELFN1P0C7U0 828 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 HNRNPA2B1P22626 353 aaKnown RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 TERF1P54274 439 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 WNT3AP56704 352 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 GNG11P61952 73 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 SFSWAPQ12872 951 aaKnown RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 PTPRCAPQ14761 206 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 GRM3Q14832 879 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 RSPO4Q2I0M5 234 aaPredicted RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 SETMARQ53H47 684 aaPredicted RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 STPG1Q5TH74 334 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 KIAA1161Q6NSJ0 714 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 GATAD2AQ86YP4 633 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 CBARPQ8N350 705 aaPredicted RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 SPOCK2Q92563 424 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 OSBPL9Q96SU4 736 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 NUSAP1Q9BXS6 441 aaKnown RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 TCEAL2Q9H3H9 227 aaPredicted RBP13.52□□□□□ -0.25
LINC00540-202ENST00000616974 GAREM1Q9H706 876 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 AMACRQ9UHK6 382 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 RSPH14Q9UHP6 348 aa13.52□□□□□ -0.25
LINC00540-202ENST00000616974 ACACBO00763 2458 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 ANKRD66B4E2M5 251 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 TM7SF2O76062 418 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 HEXIM1O94992 359 aaKnown RBP13.51□□□□□ -0.25
LINC00540-202ENST00000616974 PCCBP05166 539 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 THEGLP0DJG4 465 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 GNSP15586 552 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 CA5AP35218 305 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 CTSKP43235 329 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 GRIA4P48058 902 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 BNIP3Q12983 259 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 NEK5Q6P3R8 708 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 Q6ZSR6 202 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 BZW1Q7L1Q6 419 aaKnown RBP13.51□□□□□ -0.25
LINC00540-202ENST00000616974 LYSMD3Q7Z3D4 306 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 PTAR1Q7Z6K3 402 aaPredicted RBP13.51□□□□□ -0.25
LINC00540-202ENST00000616974 GBA3Q9H227 469 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 PHTF1Q9UMS5 762 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 BTBD3Q9Y2F9 522 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 DCDC2BA2VCK2 349 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 GOLGA6L9A6NEM1 432 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 PRAMEF26H0Y7S4 382 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 TLR4O00206 839 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 GIPC1O14908 333 aa13.51□□□□□ -0.25
LINC00540-202ENST00000616974 IFNB1P01574 187 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms